RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CSNK1G3Q9Y6M4 447 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 C13orf42A0A1B0GVH6 325 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 A0A1W2PPL8 197 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 KCNJ13O60928 360 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 LDB3O75112 727 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 CSO75390 466 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 MT-ND4P03905 459 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 NPPBP16860 134 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 BPHLQ86WA6 291 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 STX12Q86Y82 276 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 RASGRP3Q8IV61 690 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 OR56A3Q8NH54 315 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 SPRYD4Q8WW59 207 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 OR2M2Q96R28 347 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ACTR10Q9NZ32 417 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 NDUFAF4Q9P032 175 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 PRSS38A1L453 326 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 HYKKA2RU49 373 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ARPC1BO15143 372 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 HCRTR2O43614 444 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 FZD6O60353 706 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 DRD1P21728 446 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 RIPPLY1Q0D2K3 151 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 GALNTL5Q7Z4T8 443 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC44A3Q8N4M1 653 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 POGLUT1Q8NBL1 392 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF285Q96NJ3 590 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 GPER1Q99527 375 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ATP13A2Q9NQ11 1180 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 TP53P04637 393 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 GIPRP48546 466 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 GPLD1P80108 840 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 PUM1Q14671 1186 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 FAM76BQ5HYJ3 339 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 Q6ZNB5 142 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 CPOQ8IVL8 374 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 GPALPP1Q8IXQ4 340 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ADAD1Q96M93 576 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 ASB16Q96NS5 453 aa15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEFF2Q9UIK5 374 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-209ENST00000494080 NINQ8N4C6 2090 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 TRBV4-1A0A0J9YWV2 114 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ASPDHA6ND91 283 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF705EA8MWA4 302 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 GATBO75879 557 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 TSPAN12O95859 305 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 OR8J2Q8NGG1 315 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 STOML3Q8TAV4 291 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 CASTOR1Q8WTX7 329 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ZDHHC12Q96GR4 267 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 HHIPQ96QV1 700 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 NPIPA5A0A0B4J1W7 369 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 NPIPA7E9PJI5 369 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 NPIPA8P0DM63 369 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 SLC6A6P31641 620 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 NAA10P41227 235 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 E2F1Q01094 437 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 CRYZQ08257 329 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 RAB40BQ12829 278 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 CAMK2BQ13554 666 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ALG1LQ6GMV1 187 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 HORMAD2Q8N7B1 307 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ZDHHC1Q8WTX9 485 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 HAVCR1Q96D42 359 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 TOE1Q96GM8 510 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ACTRT3Q9BYD9 372 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 BCL2L14Q9BZR8 327 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 PRDM9Q9NQV7 894 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 GLS2Q9UI32 602 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 SEC16AO15027 2179 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 RLN2P04090 185 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 INHBBP09529 407 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 GTF2F2P13984 249 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ADH7P40394 386 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 METTL11BQ5VVY1 283 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 IDO2Q6ZQW0 420 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ZNF765Q7L2R6 523 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 SDR16C5Q8N3Y7 309 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 RBPMSQ93062 196 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 UQCC2Q9BRT2 126 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 POT1Q9NUX5 634 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 SCML1Q9UN30 329 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 FARSAQ9Y285 508 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEM5Q9Y2B1 443 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 ATG2BQ96BY7 2078 aa15.28■□□□□ 0.04
CCDC88B-209ENST00000494080 B3GALNT1O75752 331 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 CD2P06729 351 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 MAOBP27338 520 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 RABIFP47224 123 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 DNASE1L1P49184 302 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 PLK5Q496M5 336 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 SAXO2Q658L1 398 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEFF1Q8IYR6 380 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 OR4F15Q8NGB8 312 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 RNASE11Q8TAA1 199 aaKnown RBP15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 LYSMD1Q96S90 227 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 TMEM168Q9H0V1 697 aa15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 COL11A1P12107 1806 aaPredicted RBP15.27■□□□□ 0.04
CCDC88B-209ENST00000494080 M0R036 132 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms