RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RIPOR3Q96MK2 946 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 SERINC2Q96SA4 455 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TMEM168Q9H0V1 697 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 PPIL3Q9H2H8 161 aaKnown RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 CAPN10Q9HC96 672 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 BABAM2Q9NXR7 383 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 NOX1Q9Y5S8 564 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 SMIM10L1P0DMW3 83 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 CHRNB1P11230 501 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 BMP7P18075 431 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 ELK1P19419 428 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 ACTR1BP42025 376 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 ACTR1AP61163 376 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 CSTF1Q05048 431 aaKnown RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 ITPRIPL2Q3MIP1 535 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TMEM196Q5HYL7 178 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 DCST2Q5T1A1 773 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 IL20RBQ6UXL0 311 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 OR10H4Q8NGA5 316 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 FLVCR1-AS1Q8TAF5 88 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 BRIX1Q8TDN6 353 aaKnown RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 SMIM10Q96HG1 83 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 HS6ST2Q96MM7 605 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TMEM43Q9BTV4 400 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 OR51V1Q9H2C8 321 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 PIGUQ9H490 435 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 KRCC1Q9NPI7 259 aaPredicted RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 CD93Q9NPY3 652 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 CLDND1Q9NY35 253 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 ZNF223Q9UK11 482 aaPredicted RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 PCDHGB7Q9Y5F8 929 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 A0A1B0GVC2 190 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 FAM240BA0A1B0GVZ2 78 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 DAPL1A0PJW8 107 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 A6NIN4 97 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 BHLHE40O14503 412 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 LYRM1O43325 122 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 RGS9O75916 674 aaPredicted RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 PRKAR1AP10644 381 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 SHC1P29353 583 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 RPS7P62081 194 aaKnown RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 EXOSC7Q15024 291 aaKnown RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 CCDC85BQ15834 202 aaPredicted RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 FAM27D1Q5T7N8 215 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 FCRL6Q6DN72 434 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 METAP1DQ6UB28 335 aaPredicted RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 THSD4Q6ZMP0 1018 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 USP53Q70EK8 1073 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 ZNF619Q8N2I2 560 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 TMEM52Q8NDY8 209 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 OR52L1Q8NGH7 329 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 PTP4A1Q93096 173 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 MYADMQ96S97 322 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 GDF15Q99988 308 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 WACQ9BTA9 647 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 RBFOX1Q9NWB1 397 aaKnown RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 POLHQ9Y253 713 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 ALG5Q9Y673 324 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 E9PI62 339 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 STX11O75558 287 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 HLA-DQB1P01920 261 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 CLUP10909 449 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 UGT2B7P16662 529 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 NT5EP21589 574 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 RFX3P48380 749 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 INPP1P49441 399 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 EIPR1Q53HC9 387 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 Q5BKY6 102 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 ZNF57Q68EA5 555 aaPredicted RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 MZT2BQ6NZ67 158 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 FIGLAQ6QHK4 219 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 ZNF438Q7Z4V0 828 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 GID4Q8IVV7 300 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 SLC37A3Q8NCC5 494 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 TOR1AIP2Q8NFQ8 470 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 OR5T3Q8NGG3 340 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 OR13C2Q8NGS9 318 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 IFT27Q9BW83 186 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 YIPF2Q9BWQ6 316 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 ZNF350Q9GZX5 532 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 C19orf53Q9UNZ5 99 aaPredicted RBP16.66■□□□□ 0.26
VIM-206ENST00000487938 SLC22A7Q9Y694 548 aa16.66■□□□□ 0.26
VIM-206ENST00000487938 SZT2Q5T011 3432 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 A0A0G2JMP0 313 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 A0A0X1KG70 313 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 OR6C70A6NIJ9 312 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 LAMP2P13473 410 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 COL9A1P20849 921 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 PRPF38BQ5VTL8 546 aaKnown RBP16.65■□□□□ 0.26
VIM-206ENST00000487938 ZC3H14Q6PJT7 736 aaKnown RBP16.65■□□□□ 0.26
VIM-206ENST00000487938 ARL9Q6T311 187 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 PRR23CQ6ZRP0 262 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 COX18Q8N8Q8 333 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 OR4M2Q8NGB6 313 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 OR51A7Q8NH64 312 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 OR5W2Q8NH69 310 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 EXTL2Q9UBQ6 330 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 TRAV27A0A087WT01 109 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 OR6C74A6NCV1 312 aa16.65■□□□□ 0.26
VIM-206ENST00000487938 HYAL3O43820 417 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms