RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 LOXP28300 417 aaPredicted RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 ELK4P28324 431 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 EIF1P41567 113 aaKnown RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 ZNF117Q03924 483 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 FOXF1Q12946 379 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 TP53BP2Q13625 1128 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 SPDYE7PQ495Y7 208 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 ATP6AP1LQ52LC2 224 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 GTF2IRD2BQ6EKJ0 949 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 EMBQ6PCB8 327 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 STAC2Q6ZMT1 411 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 C22orf34Q6ZV56 151 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 MTERF4Q7Z6M4 381 aaKnown RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 YTHDF3Q7Z739 585 aaKnown RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 GTF2IRD2Q86UP8 949 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 TRABD2AQ86V40 505 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 LILRA2Q8N149 483 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 RIBC1Q8N443 379 aaPredicted RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 BANPQ8N9N5 519 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 OR56A1Q8NGH5 318 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 OR2W6PQ8NHA6 318 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 POC1BQ8TC44 478 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 PHOSPHO1Q8TCT1 267 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 REXO5Q96IC2 774 aaKnown RBP17.67■□□□□ 0.42
COL9A3-210ENST00000472880 COX4I2Q96KJ9 171 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 Q96MF0 132 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 MECRQ9BV79 373 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 C12orf49Q9H741 205 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 ATAD3AQ9NVI7 634 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 GIN1Q9NXP7 522 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 GIMAP2Q9UG22 337 aa17.67■□□□□ 0.42
COL9A3-210ENST00000472880 VPS13CQ709C8 3753 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 H3BNH8 94 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 PEX11AO75192 247 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 HEXAP06865 529 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 THBDP07204 575 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 KRT16P08779 473 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 NUDT17P0C025 328 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 LINGO3P0C6S8 592 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 PABPC4LP0CB38 370 aaKnown RBP17.66■□□□□ 0.42
COL9A3-210ENST00000472880 AGTR1P30556 359 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 SFTPDP35247 375 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 NR1H2P55055 460 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 UGT3A2Q3SY77 523 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 XKR7Q5GH72 579 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 CDC73Q6P1J9 531 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 PRSS57Q6UWY2 283 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 ADAMTS15Q8TE58 950 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 OR5P2Q8WZ92 322 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 OSTF1Q92882 214 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 KLHDC3Q9BQ90 382 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 C1orf50Q9BV19 199 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 ACTRT3Q9BYD9 372 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 ACTR6Q9GZN1 396 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 HOXD1Q9GZZ0 328 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 SLC17A7Q9P2U7 560 aa17.66■□□□□ 0.42
COL9A3-210ENST00000472880 FAF1Q9UNN5 650 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-210ENST00000472880 RAI1Q7Z5J4 1906 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-210ENST00000472880 H7C1Q1 480 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 LAMP1P11279 417 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 CCT3P49368 545 aaKnown RBP17.65■□□□□ 0.42
COL9A3-210ENST00000472880 SUMO3P55854 103 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-210ENST00000472880 CARD18P57730 90 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 PTGR1Q14914 329 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 ZNF239Q16600 458 aaKnown RBP17.65■□□□□ 0.42
COL9A3-210ENST00000472880 DCST2Q5T1A1 773 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 ZNF704Q6ZNC4 412 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-210ENST00000472880 ZCCHC23Q6ZST2 131 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 PLEKHM3Q6ZWE6 761 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 WFDC8Q8IUA0 241 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 NATD1Q8N6N6 113 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 CPNE4Q96A23 557 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-210ENST00000472880 PRPF18Q99633 342 aaKnown RBP17.65■□□□□ 0.42
COL9A3-210ENST00000472880 BDH2Q9BUT1 245 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 TIGARQ9NQ88 270 aa17.65■□□□□ 0.42
COL9A3-210ENST00000472880 NPIPA5A0A0B4J1W7 369 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 GJE1A6NN92 205 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 NPIPA7E9PJI5 369 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 KLF4O43474 513 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 SPAG7O75391 227 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 SKAP2O75563 359 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-210ENST00000472880 LYPLA1O75608 230 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-210ENST00000472880 C6orf47O95873 294 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 NPIPA8P0DM63 369 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 SERPINB5P36952 375 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 RNF144AP50876 292 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-210ENST00000472880 P2RX1P51575 399 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 IFFO1Q0D2I5 559 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 LSM12Q3MHD2 195 aaKnown RBP17.64■□□□□ 0.41
COL9A3-210ENST00000472880 TMEM201Q5SNT2 666 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 ZNF614Q8N883 585 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 FNDC5Q8NAU1 212 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 PSMA8Q8TAA3 256 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 PPP1R14CQ8TAE6 165 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 SFXN5Q8TD22 340 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 RNF128Q8TEB7 428 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 ROBO4Q8WZ75 1007 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 GSX2Q9BZM3 304 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 OR10A4Q9H209 315 aa17.64■□□□□ 0.41
COL9A3-210ENST00000472880 CXorf36Q9H7Y0 433 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms