RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RERGQ96A58 199 aaPredicted RBP13.75□□□□□ -0.21
USP4-203ENST00000415188 LRR1Q96L50 414 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 ZFYVE21Q9BQ24 234 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 CCDC3Q9BQI4 270 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 SYNDIG1Q9H7V2 258 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 EQTNQ9NQ60 294 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 C19orf53Q9UNZ5 99 aaPredicted RBP13.75□□□□□ -0.21
USP4-203ENST00000415188 DOLKQ9UPQ8 538 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 SATB2Q9UPW6 733 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 RP1P56715 2156 aa13.75□□□□□ -0.21
USP4-203ENST00000415188 HYKKA2RU49 373 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 PMS2P1A4D2B8 440 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 C2orf74A8MZ97 194 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ZNF670-ZNF695F2Z2N8 137 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 PTTG1O95997 202 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ALOX12P18054 663 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 MAGP20916 626 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 PDX1P52945 283 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 RPS3AP61247 264 aaKnown RBP13.74□□□□□ -0.21
USP4-203ENST00000415188 DUSP8Q13202 625 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ELOCQ15369 112 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 LTB4RQ15722 352 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 SPANXN2Q5MJ10 180 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ACSM5Q6NUN0 579 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 MBOAT2Q6ZWT7 520 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 RNF44Q7L0R7 432 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 OLIG3Q7RTU3 272 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 LYSMD2Q8IV50 215 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 RFKQ969G6 155 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 MCHR1Q99705 422 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 CCDC32Q9BV29 185 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 NUAK2Q9H093 628 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 SAP130Q9H0E3 1048 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 TMEM168Q9H0V1 697 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 PIGUQ9H490 435 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 POLE3Q9NRF9 147 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 SSR3Q9UNL2 185 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 WDR45Q9Y484 360 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 KIR2DS5A0A0G2JLQ3 304 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 A0A0G2JNG1 304 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 A0A1W2PS29 197 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 KIR2DS3K7RE56 304 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 P2RX6O15547 441 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 TPST2O60704 377 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 TNFP01375 233 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 HMGN1P05114 100 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 CPEP16870 476 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 RPS4Y1P22090 263 aaKnown RBP13.74□□□□□ -0.21
USP4-203ENST00000415188 PTGER1P34995 402 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 LSSP48449 732 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 WNT4P56705 351 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 RUNX2Q13950 521 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 KIR2DS5Q14953 304 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ZNF628Q5EBL2 1059 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 FHL5Q5TD97 284 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 TYW3Q6IPR3 259 aaKnown RBP13.74□□□□□ -0.21
USP4-203ENST00000415188 FAM111BQ6SJ93 734 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 CCDC190Q86UF4 302 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 TRIM73Q86UV7 250 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 RANBP3LQ86VV4 465 aaPredicted RBP13.74□□□□□ -0.21
USP4-203ENST00000415188 SFTPA2Q8IWL1 248 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 SPACA3Q8IXA5 215 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 GPBAR1Q8TDU6 330 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 NAT6Q93015 286 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 SLC41A3Q96GZ6 507 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 STACQ99469 402 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 GPA33Q99795 319 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 NEURL2Q9BR09 285 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ASPNQ9BXN1 380 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 GSDMCQ9BYG8 508 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 QRSL1Q9H0R6 528 aaKnown RBP13.74□□□□□ -0.21
USP4-203ENST00000415188 PRORYQ9H606 182 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 ARMC7Q9H6L4 198 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 DUSP22Q9NRW4 184 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 CLEC2DQ9UHP7 191 aa13.74□□□□□ -0.21
USP4-203ENST00000415188 PTPRQQ9UMZ3 2332 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 A0A0J9YY10 115 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CPSF4LA6NMK7 179 aaKnown RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 KLF4O43474 513 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 FMO6PO60774 539 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 CTSVO60911 334 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 DXOO77932 396 aaKnown RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 ZIC2O95409 532 aaPredicted RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 ATP1B1P05026 303 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 DBIP07108 87 aaKnown RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 GUSBP08236 651 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 HBQ1P09105 142 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 POLR2CP19387 275 aaPredicted RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 CRYBB2P43320 205 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 GAS1P54826 345 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 DEFA1P59665 94 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 DEFA3P59666 94 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 TLE3Q04726 772 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 GPR18Q14330 331 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 PRICKLE2Q7Z3G6 844 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 GDF7Q7Z4P5 450 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 WDR53Q7Z5U6 358 aaPredicted RBP13.73□□□□□ -0.21
USP4-203ENST00000415188 GKN2Q86XP6 184 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 PHC2Q8IXK0 858 aa13.73□□□□□ -0.21
USP4-203ENST00000415188 RBM12BQ8IXT5 1001 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms