RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FBXL12Q9NXK8 326 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 EMC8O43402 210 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 SIX3O95343 332 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 OR8U8P0C7N1 319 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 WNT4P56705 351 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PIGFQ07326 219 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 AADACL3Q5VUY0 350 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 NANOGP8Q6NSW7 305 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 LRRC28Q86X40 367 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 NANOGQ9H9S0 305 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 ANKRD26Q9UPS8 1709 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 HLA-DQB2P05538 268 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 MYF6P23409 242 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 EPHA4P54764 986 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PSMF1Q92530 271 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 FCRL3Q96P31 734 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 CXXC1Q9P0U4 656 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 NPIPA5A0A0B4J1W7 369 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 hCG_1809904A0A1W2PP81 198 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 A0A1W2PPE2 198 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 A0A1W2PR64 198 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 A0A1W2PRV1 198 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 CAPNS1P04632 268 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 AADACP22760 399 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 RNF144AP50876 292 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR19Q15760 415 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 TATDN3Q17R31 274 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 C2orf27AQ580R0 203 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 MUL1Q969V5 352 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PRR11Q96HE9 360 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 NOX3Q9HBY0 568 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 TM7SF3Q9NS93 570 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 METTL15A6NJ78 407 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 FAM103A1Q9BTL3 118 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF696Q9H7X3 374 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 SERTM2A0A1B0GWG4 89 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 DTYMKP23919 212 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC1A3P43003 542 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 CLCNKBP51801 687 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 DNAJB13P59910 316 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 RPL7L1Q6DKI1 246 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 TRMT10BQ6PF06 316 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 TSPYL5Q86VY4 417 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PCED1BQ96HM7 432 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 F5H5K5 113 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ARHGAP33O14559 1287 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 SPP1P10451 314 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 UBE2G1P62253 170 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PIN1Q13526 163 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PRAMEF8Q5VWM4 474 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PRAMEF7Q5VXH5 474 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC24A5Q71RS6 500 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 KCTD13Q8WZ19 329 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 SCLYQ96I15 445 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 OR7D2Q96RA2 312 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ATF6BQ99941 703 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 HCAR1Q9BXC0 346 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 HOXD1Q9GZZ0 328 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 XKRY2A2RUG3 117 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PHOX2AO14813 284 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ENSAO43768 121 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 BEX5Q5H9J7 111 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 B3GNT7Q8NFL0 401 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 OR10K1Q8NGX5 313 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 IFI44Q8TCB0 444 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR148Q8TDV2 347 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 NPRL2Q8WTW4 380 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 FCRL1Q96LA6 429 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 DCLRE1CQ96SD1 692 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 RDH14Q9HBH5 336 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 MEIOCA2RUB1 952 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 A6NIZ1 184 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 IL4RP24394 825 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 MEOX1P50221 254 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 RAP1BP61224 184 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 RAP1AP62834 184 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ZDHHC14Q8IZN3 488 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 PTTG3PQ9NZH4 202 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ACTL7AQ9Y615 435 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 UGDHO60701 494 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 CLDN1O95832 211 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 CBX7O95931 251 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 NFATC3Q12968 1075 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 THAP3Q8WTV1 239 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 LOC102724200A0A096LPH7 203 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 KRBA1A5PL33 1030 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 MEIS3P1A6NDR6 274 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 KIAA0355O15063 1070 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR37L1O60883 481 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 TIMP2P16035 220 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 CRABP1P29762 137 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ENDOVQ8N8Q3 282 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 MED30Q96HR3 178 aa12.62□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF536O15090 1300 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC15A5A6NIM6 579 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 H3BMQ9 156 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 EIF3FO00303 357 aaPredicted RBP12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 HPGDSO60760 199 aa12.61□□□□□ -0.39
CCDC88A-204ENST00000413716 SSTR4P31391 388 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms