RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TRIM3O75382 744 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 FESP07332 822 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 PABPC4LP0CB38 370 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 IL7RP16871 459 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ME2P23368 584 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 IL12BP29460 328 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 MNAT1P51948 309 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 AP2B1P63010 937 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SKP2Q13309 424 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 VEZF1Q14119 521 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ZNF630Q2M218 657 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 CYBRD1Q53TN4 286 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ANKRD34AQ69YU3 496 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 C16orf89Q6UX73 402 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 CCDC80Q76M96 950 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 TAGAPQ8N103 731 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ZNF619Q8N2I2 560 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 OR2M7Q8NG81 312 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 PHOSPHO1Q8TCT1 267 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 CANT1Q8WVQ1 401 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 MCUR1Q96AQ8 359 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SCMH1Q96GD3 660 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 C7orf34Q96L11 122 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 AMBRA1Q9C0C7 1298 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 UBQLN3Q9H347 655 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 DCAF13Q9NV06 445 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 RHCGQ9UBD6 479 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 LIPGQ9Y5X9 500 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SPTBN1Q01082 2364 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 A0A0G2JPF8 293 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SERINC4A6NH21 518 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 FAM166BA8MTA8 275 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 HNRNPCL2B2RXH8 293 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 HNRNPCL3B7ZW38 293 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 PEX1O43933 1283 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 HNRNPCL1O60812 293 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 NUDT14O95848 222 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 HNRNPCL4P0DMR1 293 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 NID1P14543 1247 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 KLK2P20151 261 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ENDOUP21128 410 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 MAGEA5P43359 124 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 KCNJ5P48544 419 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 MASP1P48740 699 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 IST1P53990 364 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 CRISP3P54108 245 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 UCNP55089 124 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 CLDN15P56746 228 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 FGFBP1Q14512 234 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 KPNB1Q14974 876 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 ZNF766Q5HY98 468 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ZNF311Q5JNZ3 666 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SAMD4BQ5PRF9 694 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 C1QL3Q5VWW1 255 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SLC25A25Q6KCM7 469 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 OPN5Q6U736 354 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 WDR88Q6ZMY6 472 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 NUP54Q7Z3B4 507 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 YTHDF3Q7Z739 585 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 MEX3DQ86XN8 651 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 CHERPQ8IWX8 916 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 C7orf57Q8NEG2 295 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 TPD52L3Q96J77 140 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SEPHS2Q99611 448 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 BARD1Q99728 777 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 DOHHQ9BU89 302 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 DSN1Q9H410 356 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 EXO5Q9H790 373 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 EXD2Q9NVH0 621 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 LIPT1Q9Y234 373 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 VDAC3Q9Y277 283 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 ZNF443Q9Y2A4 671 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 RPH3AQ9Y2J0 694 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 DTNAQ9Y4J8 743 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 FBN2P35556 2912 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 MKRN2OSH3BPM6 223 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 HCRTR2O43614 444 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 NDUFB5O43674 189 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 NME2P1O60361 137 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 LGI1O95970 557 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 NAGAP17050 411 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 NME2P22392 152 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SHC1P29353 583 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 STARP49675 285 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 SELENOWP63302 87 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 DBPQ10586 325 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 BNIP2Q12982 314 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 PIN1Q13526 163 aaPredicted RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 LAPTM4AQ15012 233 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 EIPR1Q53HC9 387 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 DCST1Q5T197 706 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 PPP4R4Q6NUP7 873 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 CBLL1Q75N03 491 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 FGD2Q7Z6J4 655 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 YRDCQ86U90 279 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 CISD2Q8N5K1 135 aaKnown RBP3.66□□□□□ -1.82
LIG4-201ENST00000356922 SLC15A4Q8N697 577 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 TMEM251Q8N6I4 163 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 FAM71CQ8NEG0 241 aa3.66□□□□□ -1.82
LIG4-201ENST00000356922 BHLHE22Q8NFJ8 381 aaPredicted RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms