RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 UQCRC2P22695 453 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 S100A3P33764 101 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 CLNS1AP54105 237 aaKnown RBP16.53■□□□□ 0.24
CLN3-202ENST00000355477 PON3Q15166 354 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 NDUFAF6Q330K2 333 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 MAVSQ7Z434 540 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 MTERF4Q7Z6M4 381 aaKnown RBP16.53■□□□□ 0.24
CLN3-202ENST00000355477 TMEM200AQ86VY9 491 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 METTL25Q8N6Q8 603 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 ZNF527Q8NB42 609 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 CHDHQ8NE62 594 aaPredicted RBP16.53■□□□□ 0.24
CLN3-202ENST00000355477 VPS37AQ8NEZ2 397 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 FNDC9Q8TBE3 224 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 NRGNQ92686 78 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 ZBTB8AQ96BR9 441 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 ZNF524Q96C55 264 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 STARD4Q96DR4 205 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 OR51I1Q9H343 314 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 ACBD3Q9H3P7 528 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 KCNE5Q9UJ90 142 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 ICAM5Q9UMF0 924 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 CARD8Q9Y2G2 431 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 DTNAQ9Y4J8 743 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 F8P00451 2351 aa16.53■□□□□ 0.24
CLN3-202ENST00000355477 DUXAA6NLW8 204 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 TRPC5OSA6NMA1 111 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 A8MXE2 369 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 EIF1AYO14602 144 aaKnown RBP16.52■□□□□ 0.24
CLN3-202ENST00000355477 EFNA2O43921 213 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 PEX19P40855 299 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 KIR2DL2P43627 348 aaPredicted RBP16.52■□□□□ 0.24
CLN3-202ENST00000355477 ZNF41P51814 821 aaPredicted RBP16.52■□□□□ 0.24
CLN3-202ENST00000355477 DPY19L1Q2PZI1 675 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 CTU2Q2VPK5 515 aaKnown RBP16.52■□□□□ 0.24
CLN3-202ENST00000355477 ARHGAP11BQ3KRB8 267 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 SLC9B1Q4ZJI4 515 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 AGBL2Q5U5Z8 902 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 SAXO2Q658L1 398 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 OR2A2Q6IF42 318 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 VWA1Q6PCB0 445 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 CDH24Q86UP0 819 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 KIF18BQ86Y91 864 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 CNEP1R1Q8N9A8 125 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 LINC01560Q8TB33 94 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 MIPOL1Q8TD10 442 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 ZNF75CPQ92670 426 aaPredicted RBP16.52■□□□□ 0.24
CLN3-202ENST00000355477 RBM24Q9BX46 236 aaKnown RBP16.52■□□□□ 0.24
CLN3-202ENST00000355477 PIGMQ9H3S5 423 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 TMEM185BQ9H7F4 350 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 RNF122Q9H9V4 155 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 GALNT8Q9NY28 637 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 ITGB1BP2Q9UKP3 347 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 ZNF175Q9Y473 711 aa16.52■□□□□ 0.24
CLN3-202ENST00000355477 ITPR3Q14573 2671 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 CENPVL1A0A0U1RR11 272 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 FAM221AA4D161 298 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 TUBAL3A6NHL2 446 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 ZNF195O14628 629 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 AQP8O94778 261 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 CRHP06850 196 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 OR12D1P0DN82 309 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 SLC6A8P48029 635 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 RPS3AP61247 264 aaKnown RBP16.51■□□□□ 0.23
CLN3-202ENST00000355477 RAC1P63000 192 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 GPR68Q15743 365 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 TOMM34Q15785 309 aaPredicted RBP16.51■□□□□ 0.23
CLN3-202ENST00000355477 SGCBQ16585 318 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 PDZK1Q5T2W1 519 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 NXNQ6DKJ4 435 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 HEPHL1Q6MZM0 1159 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 TNFAIP8L2Q6P589 184 aaPredicted RBP16.51■□□□□ 0.23
CLN3-202ENST00000355477 BTLAQ7Z6A9 289 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 ZNF614Q8N883 585 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 GPR119Q8TDV5 335 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 FAM222BQ8WU58 562 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 RAB8BQ92930 207 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 NEURL3Q96EH8 262 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 MAELQ96JY0 434 aaKnown RBP16.51■□□□□ 0.23
CLN3-202ENST00000355477 ADGRG7Q96K78 797 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 MARK4Q96L34 752 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 CCDC115Q96NT0 180 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 GPATCH1Q9BRR8 931 aaKnown RBP16.51■□□□□ 0.23
CLN3-202ENST00000355477 INPP5KQ9BT40 448 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 NMUR2Q9GZQ4 415 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 DNAJB12Q9NXW2 375 aaKnown RBP16.51■□□□□ 0.23
CLN3-202ENST00000355477 BTNL2Q9UIR0 455 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 PACSIN3Q9UKS6 424 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 MKLN1Q9UL63 735 aa16.51■□□□□ 0.23
CLN3-202ENST00000355477 FREM1Q5H8C1 2179 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 A0A0J9YW62 118 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 SLCO1B7G3V0H7 640 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 H3BNH8 94 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 GTPBP1O00178 669 aaKnown RBP16.5■□□□□ 0.23
CLN3-202ENST00000355477 KLF11O14901 512 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 ADAMDEC1O15204 470 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 STX11O75558 287 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 PGRP06401 933 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 EIF1AXP47813 144 aaKnown RBP16.5■□□□□ 0.23
CLN3-202ENST00000355477 CPA2P48052 419 aa16.5■□□□□ 0.23
CLN3-202ENST00000355477 P2RX1P51575 399 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms