RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 AKR1D1P51857 326 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PSMA6P60900 246 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 RAP2BP61225 183 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PITPNAQ00169 270 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CNTN1Q12860 1018 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 GK2Q14410 553 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 CSRP2Q16527 193 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SYTL3Q4VX76 610 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 LDLRAD1Q5T700 205 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PLBD1Q6P4A8 553 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 HIST3H2AQ7L7L0 130 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CXXC5Q7LFL8 322 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 TAS1R1Q7RTX1 841 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SZRD1Q7Z422 152 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 MCATQ8IVS2 390 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 NKAIN4Q8IVV8 208 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RELL2Q8NC24 303 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR2AP1Q8NGE2 309 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR52B4Q8NGK2 314 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR5M9Q8NGP3 310 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 AUTS2Q8WXX7 1259 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 DIO2Q92813 273 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 KAT2AQ92830 837 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 HIST1H2ACQ93077 130 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 KISS1RQ969F8 398 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 EXOSC8Q96B26 276 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 TMEM159Q96B96 161 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZNF707Q96C28 371 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 TM4SF18Q96CE8 201 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SLC22A12Q96S37 553 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 EFCAB11Q9BUY7 163 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SLC6A20Q9NP91 592 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 TRIM36Q9NQ86 728 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SLC35C2Q9NQQ7 365 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 P2RX2Q9UBL9 471 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZNF69Q9UC07 566 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PURGQ9UJV8 347 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 PPIL1Q9Y3C6 166 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PCDHGA5Q9Y5G8 931 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 COL4A3Q01955 1670 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CDC42EP2O14613 210 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PGRMC2O15173 223 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CTDSPLO15194 276 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 KLF4O43474 513 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RLN2P04090 185 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 THY1P04216 161 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SERPIND1P05546 499 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CTSAP10619 480 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 EPXP11678 715 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CPN1P15169 458 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 IFNGR1P15260 489 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PPP3CBP16298 524 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 FRKP42685 505 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 MAPK8P45983 427 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 H2BFSP57053 126 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 TAS2R41P59536 307 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 DEFA5Q01523 94 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OC90Q02509 493 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 MAP2K5Q13163 448 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PLD1Q13393 1074 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 UBXN2BQ14CS0 331 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 LINC00303Q3SY05 128 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ACSM3Q53FZ2 586 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 C6orf132Q5T0Z8 1188 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CDC73Q6P1J9 531 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 NIPAL3Q6P499 406 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZNF620Q6ZNG0 422 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 HSD11B1LQ7Z5J1 315 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 NAXDQ8IW45 347 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PDZD9Q8IXQ8 264 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 CMTM4Q8IZR5 234 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RASGEF1AQ8N9B8 481 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 OR52I2Q8NH67 350 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 LGALS14Q8TCE9 139 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 THEM6Q8WUY1 208 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SLC5A11Q8WWX8 675 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 YIPF4Q9BSR8 244 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 IFT27Q9BW83 186 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SGPP1Q9BX95 441 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ARL6Q9H0F7 186 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 MTG2Q9H4K7 406 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SUV39H2Q9H5I1 410 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 NEUROD4Q9HD90 331 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 FANCFQ9NPI8 374 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 MED17Q9NVC6 651 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 MARCH5Q9NX47 278 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 TRPC4Q9UBN4 977 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 NPFFR2Q9Y5X5 522 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ANTXRLA6NF34 631 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 REM1O75628 298 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PCDH8O95206 1070 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 C1orf105O95561 183 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RB1P06400 928 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 H2AFB1P0C5Y9 115 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 ZGLP1P0C6A0 271 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 SAGP10523 405 aaPredicted RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 ALPPL2P10696 532 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 RPL17P18621 184 aaKnown RBP6.32□□□□□ -1.4
VPS39-202ENST00000348544 FPR3P25089 353 aa6.32□□□□□ -1.4
VPS39-202ENST00000348544 PBLDP30039 288 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms