RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 COL5A1P20908 1838 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 TRAPPC13A5PLN9 417 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 NPIPB9F8W1W9 429 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 MPZL2O60487 215 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 BCAS1O75363 584 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 SCRG1O75711 98 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 DDAH2O95865 285 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 TP53P04637 393 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 DRD5P21918 477 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 RORAP35398 523 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 MPLP40238 635 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 PLAURQ03405 335 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 ANGPT1Q15389 498 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 C6orf183Q5T699 404 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 PHF19Q5T6S3 580 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 SLX4IPQ5VYV7 408 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 OR14A16Q8NHC5 309 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 GPA33Q99795 319 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 TGIF2Q9GZN2 237 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 SLC22A11Q9NSA0 550 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 C14orf105Q9NVL8 296 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 ERVK-18Q9QC07 812 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 RSL24D1Q9UHA3 163 aaKnown RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 TIAF1O95411 115 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 IL33O95760 270 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 IGKV3-11P04433 115 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 IGFBP1P08833 259 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 ANKDD1AQ495B1 522 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 PRICKLE2Q7Z3G6 844 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 SLITRK4Q8IW52 837 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 ZNF721Q8TF20 911 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 CNOT9Q92600 299 aaKnown RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 DAZLQ92904 295 aaKnown RBP13.17□□□□□ -0.3
C9orf3-202ENST00000297979 ART5Q96L15 291 aa13.17□□□□□ -0.3
C9orf3-202ENST00000297979 SYNDIG1LA6NDD5 238 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 D6RAR5 112 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 M0R129 80 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 CDK2AP1O14519 115 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 POLR1CO15160 346 aaPredicted RBP13.16□□□□□ -0.3
C9orf3-202ENST00000297979 MRPS14O60783 128 aaKnown RBP13.16□□□□□ -0.3
C9orf3-202ENST00000297979 NTN1O95631 604 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 OMPP47874 163 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 ATP12AP54707 1039 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 OR1Q1Q15612 314 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 ZSWIM7Q19AV6 140 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 C12orf73Q69YU5 71 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PWWP2BQ6NUJ5 590 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 LAPTM4BQ86VI4 370 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 ZSCAN1Q8NBB4 408 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 SLC38A9Q8NBW4 561 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 TMEM255BQ8WV15 326 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 NMD3Q96D46 503 aaKnown RBP13.16□□□□□ -0.3
C9orf3-202ENST00000297979 RHNO1Q9BSD3 238 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PLCXD1Q9NUJ7 323 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 IGLV3-12A0A075B6K2 115 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 RGS10O43665 173 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 GSTT1P30711 240 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PPICP45877 212 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 TSPAN31Q12999 210 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 FGFBP1Q14512 234 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PLBD1Q6P4A8 553 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PTCHD4Q6ZW05 846 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 MBOAT2Q6ZWT7 520 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 AHSA2Q719I0 299 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 CLVS1Q8IUQ0 354 aaPredicted RBP13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PLPP5Q8NEB5 264 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 FAM46AQ96IP4 442 aaKnown RBP13.16□□□□□ -0.3
C9orf3-202ENST00000297979 ZNF559Q9BR84 538 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 DNAJB12Q9NXW2 375 aaKnown RBP13.16□□□□□ -0.3
C9orf3-202ENST00000297979 LAMP5Q9UJQ1 280 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 PCDHGB1Q9Y5G3 927 aa13.16□□□□□ -0.3
C9orf3-202ENST00000297979 NTN3O00634 580 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-202ENST00000297979 PCMT1P22061 227 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 OCA2Q04671 838 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 NKAIN1Q4KMZ8 207 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 PPP1R3BQ86XI6 285 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 MEX3DQ86XN8 651 aaKnown RBP13.15□□□□□ -0.3
C9orf3-202ENST00000297979 CMIPQ8IY22 773 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 OR13F1Q8NGS4 319 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 STT3BQ8TCJ2 826 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 ARRDC1-AS1Q9H2J1 176 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 KRCC1Q9NPI7 259 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-202ENST00000297979 CNIH4Q9P003 139 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 MUC3AQ02505 3323 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 FRG2CA6NGY1 282 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 HBQ1P09105 142 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 ITIH1P19827 911 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 AVPR2P30518 371 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 TCEAL6Q6IPX3 200 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 CASP12Q6UXS9 341 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 NRMQ8IXM6 262 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 TCEAL3Q969E4 200 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 PRSS27Q9BQR3 290 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 NUDT9Q9BW91 350 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 PSORS1C1Q9UIG5 152 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 COMMD3-BMI1R4GMX3 469 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 SEC16AO15027 2179 aa13.15□□□□□ -0.3
C9orf3-202ENST00000297979 A6NJY4 79 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms