RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PLEKHA1Q9HB21 404 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 TLR8Q9NR97 1041 aaKnown RBP12.16□□□□□ -0.46
MSH2-201ENST00000233146 DUSP22Q9NRW4 184 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 VSX1Q9NZR4 365 aaPredicted RBP12.16□□□□□ -0.46
MSH2-201ENST00000233146 UXTQ9UBK9 157 aaPredicted RBP12.16□□□□□ -0.46
MSH2-201ENST00000233146 WASF3Q9UPY6 502 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 NINQ8N4C6 2090 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 OR14I1A6ND48 311 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 CHST10O43529 356 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 C6orf47O95873 294 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 RHOP08100 348 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 MTNR1AP48039 350 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 SORDQ00796 357 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 DHCR24Q15392 516 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 CTSL3PQ5NE16 218 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 NCMAPQ5T1S8 102 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 LIPJQ5W064 366 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 NPSR1Q6W5P4 371 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 SSX6Q7RTT6 188 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 LRRC52Q8N7C0 313 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 AVL9Q8NBF6 648 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 OR52B4Q8NGK2 314 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 GJD4Q96KN9 370 aaPredicted RBP12.16□□□□□ -0.46
MSH2-201ENST00000233146 ZNF75AQ96N20 296 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 JAM3Q9BX67 310 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 KLHL31Q9H511 634 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 BCAT2O15382 392 aaPredicted RBP12.16□□□□□ -0.46
MSH2-201ENST00000233146 FGF16O43320 207 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 GJA1P17302 382 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 PRPH2P23942 346 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 CEACAM6P40199 344 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 RBM39Q14498 530 aaKnown RBP12.16□□□□□ -0.46
MSH2-201ENST00000233146 CSRP2Q16527 193 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 ARMC12Q5T9G4 340 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 RAB12Q6IQ22 244 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 ACSM5Q6NUN0 579 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 SMARCD3Q6STE5 483 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 TMPRSS11FQ6ZWK6 438 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 OR4Q3Q8NH05 313 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 S100PBPQ96BU1 408 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 POM121Q96HA1 1249 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 ZNF649Q9BS31 505 aa12.16□□□□□ -0.46
MSH2-201ENST00000233146 TMEM72A0PK05 275 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 NUDT19A8MXV4 375 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 F2P00734 622 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 CD2P06729 351 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 PAX1P15863 534 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 CERS1P27544 350 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 MAPK9P45984 424 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 SLC11A2P49281 568 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 PKIAP61925 76 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 MEF2AQ02078 507 aaPredicted RBP12.15□□□□□ -0.46
MSH2-201ENST00000233146 GINS1Q14691 196 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 MPPED2Q15777 294 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 SLC25A35Q3KQZ1 300 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 ATPAF1Q5TC12 328 aaPredicted RBP12.15□□□□□ -0.46
MSH2-201ENST00000233146 APOOLQ6UXV4 268 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 GPRIN1Q7Z2K8 1008 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 KCNRGQ8N5I3 272 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 OR4A4PQ8NGN8 299 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 CMTM7Q96FZ5 175 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 APIPQ96GX9 242 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 FUBP3Q96I24 572 aaKnown RBP eCLIP12.15□□□□□ -0.46
MSH2-201ENST00000233146 TDRD15B5MCY1 1934 aaKnown RBP12.15□□□□□ -0.46
MSH2-201ENST00000233146 CLDN5O00501 218 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 MBTPS2O43462 519 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 RNF13O43567 381 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 RDH16O75452 317 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 RNH1P13489 461 aaKnown RBP12.15□□□□□ -0.46
MSH2-201ENST00000233146 HGFACQ04756 655 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 LINC00303Q3SY05 128 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 HEPHL1Q6MZM0 1159 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 TMEM200AQ86VY9 491 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 AMIGO3Q86WK7 504 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 OR2AK2Q8NG84 335 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 HMGB4Q8WW32 186 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 MYLIPQ8WY64 445 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 CHST5Q9GZS9 411 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 TREM1Q9NP99 234 aa12.15□□□□□ -0.46
MSH2-201ENST00000233146 TRAV14DV4A0A0A6YYC5 116 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 IFITM10A6NMD0 228 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 PSMD9O00233 223 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 MED6O75586 246 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 LHX1P48742 406 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 HNRNPKP61978 463 aaKnown RBP eCLIP12.14□□□□□ -0.47
MSH2-201ENST00000233146 FOXO1Q12778 655 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 GAB1Q13480 694 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 DEFB115Q30KQ5 88 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 PLEKHN1Q494U1 663 aaPredicted RBP12.14□□□□□ -0.47
MSH2-201ENST00000233146 ARTNQ5T4W7 220 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 CXorf57Q6NSI4 855 aaKnown RBP12.14□□□□□ -0.47
MSH2-201ENST00000233146 ZNF783Q6ZMS7 281 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 ZNF546Q86UE3 836 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 TAC4Q86UU9 113 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 HORMAD2Q8N7B1 307 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 PIGQQ9BRB3 760 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 CXCL16Q9H2A7 254 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 RCC2Q9P258 522 aaKnown RBP12.14□□□□□ -0.47
MSH2-201ENST00000233146 ZBTB42B2RXF5 422 aa12.14□□□□□ -0.47
MSH2-201ENST00000233146 PGRMC2O15173 223 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms