RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZNF865P0CJ78 1059 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 DNAJB1P25685 340 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ADCYAP1R1P41586 468 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CCR8P51685 355 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CATR1Q13166 79 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ARHGAP19Q14CB8 494 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TAF9Q16594 264 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CHRFAM7AQ494W8 412 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC36A2Q495M3 483 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LRRC66Q68CR7 880 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LHX8Q68G74 356 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RSPO2Q6UXX9 243 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CRYBG2Q8N1P7 616 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PRR11Q96HE9 360 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PPM1MQ96MI6 270 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BARD1Q99728 777 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLCO1B3Q9NPD5 702 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 STARD5Q9NSY2 213 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CD300AQ9UGN4 299 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FBXL4Q9UKA2 621 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ECM29Q5VYK3 1845 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 C19orf67A6NJJ6 358 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LGALS8O00214 317 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RFXANKO14593 260 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NRP1O14786 923 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MSI1O43347 362 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RAB3DO95716 219 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PTTG1O95997 202 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FGF1P05230 155 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CHRM4P08173 479 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LTA4HP09960 611 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GALNSP34059 522 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 EMP3P54852 163 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R43P59537 309 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SRSF4Q08170 494 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 Q6ZRG5 221 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HMGN2P46Q86SG4 172 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZBTB2Q8N680 514 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LRRC52Q8N7C0 313 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 YIPF7Q8N8F6 280 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HOXB13Q92826 284 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF486Q96H40 463 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BCL7BQ9BQE9 202 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 BPIFA1Q9NP55 256 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 AGPAT5Q9NUQ2 364 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 HECW2Q9P2P5 1572 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 A6NIN4 97 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TNFRSF11BO00300 401 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FHP07954 510 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 IL3P08700 152 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GSTP1P09211 210 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CRHR1P34998 444 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SEMG2Q02383 582 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 IAH1Q2TAA2 248 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZC3H12AQ5D1E8 599 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 FAM209BQ5JX69 171 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CAMKMTQ7Z624 323 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 RETREG3Q86VR2 466 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MISPQ8IVT2 679 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PACRGLQ8N7B6 248 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR56B1Q8NGI3 324 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR4K13Q8NH42 304 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SH3RF3Q8TEJ3 882 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 WBP2Q969T9 261 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NUS1Q96E22 293 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PDCD1LG2Q9BQ51 273 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MRPL45Q9BRJ2 306 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 UBTD1Q9HAC8 227 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CEP192Q8TEP8 1941 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LMO7Q8WWI1 1683 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ODAMA1E959 279 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MEIS3P1A6NDR6 274 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CLIC1O00299 241 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CCL16O15467 120 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LY86O95711 162 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 PREPP48147 710 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 LEPRP48357 1165 aaKnown RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF136P52737 540 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NKX2-5P52952 324 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NDUFA6P56556 154 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SOX10P56693 466 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MVKQ03426 396 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ETFDHQ16134 617 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 TLDC1Q6P9B6 456 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SERPINA9Q86WD7 417 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 XYLT1Q86Y38 959 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 C4orf19Q8IY42 314 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ANKRD53Q8N9V6 530 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 NHLRC2Q8NBF2 726 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 OR4M1Q8NGD0 313 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 STYXQ8WUJ0 223 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 MAL2Q969L2 176 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 ALG8Q9BVK2 526 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 GREM2Q9H772 168 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SLC2A9Q9NRM0 540 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SNX15Q9NRS6 342 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 SMPD4Q9NXE4 827 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 CES1P1Q9UKY3 287 aa2.64□□□□□ -1.99
SCN1A-219ENST00000641575 USP3Q9Y6I4 520 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms