RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CAMK2AQ9UQM7 478 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 PCDHB14Q9Y5E9 798 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 DOCK7Q96N67 2140 aa18.79■□□□□ 0.6
CLN3-240ENST00000631023 A0A1W2PP18 115 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 FAM47E-STBD1D6RA91 191 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 LINC01387J3KSC0 135 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 HCRTR2O43614 444 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 FCMRO60667 390 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 TCEA1P23193 301 aaKnown RBP18.78■□□□□ 0.6
CLN3-240ENST00000631023 GFRA1P56159 465 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 C1orf185Q5T7R7 199 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 AP1ARQ63HQ0 302 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 ULK2Q8IYT8 1036 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 B4GALNT2Q8NHY0 566 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 ITLN2Q8WWU7 325 aaPredicted RBP18.78■□□□□ 0.6
CLN3-240ENST00000631023 OIT3Q8WWZ8 545 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 RND1Q92730 232 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 TRNT1Q96Q11 434 aaKnown RBP18.78■□□□□ 0.6
CLN3-240ENST00000631023 PAIP1Q9H074 479 aaKnown RBP18.78■□□□□ 0.6
CLN3-240ENST00000631023 RAD21L1Q9H4I0 556 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 ZNF385DQ9H6B1 395 aa18.78■□□□□ 0.6
CLN3-240ENST00000631023 THUMPD1Q9NXG2 353 aaKnown RBP18.78■□□□□ 0.6
CLN3-240ENST00000631023 UTP20O75691 2785 aaKnown RBP18.78■□□□□ 0.6
CLN3-240ENST00000631023 A0A087WZY1 265 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 GMFGO60234 142 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 C1QCP02747 245 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 CPN1P15169 458 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 CRATP43155 626 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 PMPCAQ10713 525 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 CD226Q15762 336 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 ZNF141Q15928 474 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 COX20Q5RI15 118 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-240ENST00000631023 RAET1LQ5VY80 246 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 TSPEARQ8WU66 669 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 WDYHV1Q96HA8 205 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 SH3YL1Q96HL8 342 aaPredicted RBP18.77■□□□□ 0.6
CLN3-240ENST00000631023 ZNF317Q96PQ6 595 aaPredicted RBP18.77■□□□□ 0.6
CLN3-240ENST00000631023 PIGQQ9BRB3 760 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 SAP130Q9H0E3 1048 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 SLC52A3Q9NQ40 469 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 KLHL14Q9P2G3 628 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 INTS1Q8N201 2190 aaKnown RBP18.77■□□□□ 0.6
CLN3-240ENST00000631023 MED12LQ86YW9 2145 aa18.77■□□□□ 0.6
CLN3-240ENST00000631023 CLIC1O00299 241 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 NR2F1P10589 423 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 CAPN3P20807 821 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 ZNF41P51814 821 aaPredicted RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 PDZK1Q5T2W1 519 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 TYW3Q6IPR3 259 aaKnown RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 MAMDC2Q7Z304 686 aaPredicted RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 ZNF619Q8N2I2 560 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 TTYH2Q9BSA4 534 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 STOML1Q9UBI4 398 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 A1L4Q6 167 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 TMEM247A6NEH6 219 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 SERINC4A6NH21 518 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 KIAA0513O60268 411 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 UGT2B17O75795 530 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 H6PDO95479 791 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 PEPDP12955 493 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 FUT5Q11128 374 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 GTDC1Q4AE62 458 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 LRIF1Q5T3J3 769 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 RTL6Q6ICC9 239 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 CGB2Q6NT52 195 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 LRRC74BQ6ZQY2 392 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 NCCRP1Q6ZVX7 275 aaPredicted RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 MARVELD2Q8N4S9 558 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 OR10Q1Q8NGQ4 319 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 PMM1Q92871 262 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 AURKBQ96GD4 344 aaPredicted RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 P2RX2Q9UBL9 471 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 PLEKHB1Q9UF11 243 aaPredicted RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 LEF1Q9UJU2 399 aaPredicted RBP18.76■□□□□ 0.59
CLN3-240ENST00000631023 VDAC3Q9Y277 283 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 NDUFAF1Q9Y375 327 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 FAM215AQ9Y5M1 114 aa18.76■□□□□ 0.59
CLN3-240ENST00000631023 ANGPT2O15123 496 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 ZNF264O43296 627 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 EIF4E2O60573 245 aaKnown RBP18.75■□□□□ 0.59
CLN3-240ENST00000631023 GLI4P10075 376 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 UBL4AP11441 157 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 PPIBP23284 216 aaKnown RBP18.75■□□□□ 0.59
CLN3-240ENST00000631023 ADH7P40394 386 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 P2RX1P51575 399 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 MVDP53602 400 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 SUMO3P55854 103 aaPredicted RBP18.75■□□□□ 0.59
CLN3-240ENST00000631023 NUP107P57740 925 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 B3GALT5-AS1P59052 145 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 DSTNP60981 165 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 SRYQ05066 204 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 SF3A3Q12874 501 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLN3-240ENST00000631023 ART3Q13508 389 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 GNA13Q14344 377 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 BCL2A1Q16548 175 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 SYPL1Q16563 259 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 PAGE3Q5JUK9 113 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 DCST1Q5T197 706 aa18.75■□□□□ 0.59
CLN3-240ENST00000631023 ARSKQ6UWY0 536 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms