RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SPATA9Q9BWV2 254 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 OSBPL11Q9BXB4 747 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 CADM1Q9BY67 442 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS35-211ENST00000569950 ALG2Q9H553 416 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 SPAG4Q9NPE6 437 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 TIMMDC1Q9NPL8 285 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 THUMPD1Q9NXG2 353 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 ABI3Q9P2A4 366 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 SUCOQ9UBS9 1254 aaKnown RBP8.47□□□□□ -1.05
VPS35-211ENST00000569950 FBXL2Q9UKC9 423 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 ICAM5Q9UMF0 924 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 DTNAQ9Y4J8 743 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 PCDHGB3Q9Y5G1 929 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 WIF1Q9Y5W5 379 aa8.47□□□□□ -1.05
VPS35-211ENST00000569950 KIAA1549Q9HCM3 1950 aa8.46□□□□□ -1.05
VPS35-211ENST00000569950 CDHR4A6H8M9 788 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 SERINC4A6NH21 518 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 SCO2O43819 266 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TPST2O60704 377 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 SEMA7AO75326 666 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 ANGPTL1O95841 491 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 ETS2P15036 469 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 CD46P15529 392 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 GGT1P19440 569 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 CASRP41180 1078 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 ANXA11P50995 505 aaKnown RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 CRISP3P54108 245 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 MS4A2Q01362 244 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 KLRB1Q12918 225 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 VEZF1Q14119 521 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 DUSP7Q16829 419 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 CYP51A1Q16850 503 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TMEM44Q2T9K0 475 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 ATAD3BQ5T9A4 648 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TIGD3Q6B0B8 471 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 OR5M10Q6IEU7 315 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 FGD2Q7Z6J4 655 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TSEN54Q7Z6J9 526 aaKnown RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 TMEM251Q8N6I4 163 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 GATSQ8NAP1 163 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 C11orf65Q8NCR3 313 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 HIPK4Q8NE63 616 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 OR2T12Q8NG77 320 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 OR2M3Q8NG83 312 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 OR4D11Q8NGI4 311 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 BBS10Q8TAM1 723 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 DUSP19Q8WTR2 217 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 OIT3Q8WWZ8 545 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TM9SF4Q92544 642 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 CNOT9Q92600 299 aaKnown RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 PMM1Q92871 262 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TMCO6Q96DC7 493 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 SH3GL1Q99961 368 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 ECSITQ9BQ95 431 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 FAM173AQ9BQD7 235 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 TTTY12Q9BZ98 90 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 ZNF703Q9H7S9 590 aaPredicted RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 ZDHHC11Q9H8X9 412 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 MTHFD2LQ9H903 347 aaPredicted RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 RLIMQ9NVW2 624 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 DNAJB12Q9NXW2 375 aaKnown RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 C15orf41Q9Y2V0 281 aa8.46□□□□□ -1.06
VPS35-211ENST00000569950 KLF13Q9Y2Y9 288 aaPredicted RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.46□□□□□ -1.06
VPS35-211ENST00000569950 PCNX1Q96RV3 2341 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ELOVL7A1L3X0 281 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ETV2O00321 342 aaPredicted RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 ACOT8O14734 319 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 GNB5O14775 395 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 EFNA2O43921 213 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ZIC3O60481 467 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 SNX4O95219 450 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 NTN1O95631 604 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 OPN1SWP03999 348 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 P04436 131 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 THBS1P07996 1170 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 PABPC4LP0CB38 370 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 SFTPCP11686 197 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 PRG2P13727 222 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 NID1P14543 1247 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 NCK1P16333 377 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ENDOUP21128 410 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 FUT4P22083 530 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 PSMA4P25789 261 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 HTR1EP28566 365 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 AQP1P29972 269 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 KRT20P35900 424 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ACAA2P42765 397 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 MNAT1P51948 309 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 ZNF136P52737 540 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 PSMD4P55036 377 aaKnown RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 DLX5P56178 289 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 B3GALT5-AS1P59052 145 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 GABPB1Q06547 395 aaPredicted RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 TOMM34Q15785 309 aaPredicted RBP8.45□□□□□ -1.06
VPS35-211ENST00000569950 NPTX1Q15818 432 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 IQCCQ4KMZ1 466 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 CMPK2Q5EBM0 449 aa8.45□□□□□ -1.06
VPS35-211ENST00000569950 TBCELQ5QJ74 424 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms