RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LPCAT3Q6P1A2 487 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HAGHLQ6PII5 290 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 LRRN1Q6UXK5 716 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 BAIAP2L2Q6UXY1 529 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RASSF6Q6ZTQ3 369 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SYVN1Q86TM6 617 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CYP4Z1Q86W10 505 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 THOC6Q86W42 341 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 DCUN1D3Q8IWE4 304 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SELENOHQ8IZQ5 122 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 STPG2Q8N412 459 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GUF1Q8N442 669 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 SFRP1Q8N474 314 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 C11orf44Q8N8P7 122 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MRPL43Q8N983 215 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 ZNF557Q8N988 423 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 LRRC57Q8N9N7 239 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ACBD4Q8NC06 268 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 BHLHE23Q8NDY6 225 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CCDC54Q8NEL0 328 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR6J1Q8NGC5 347 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR8D4Q8NGM9 314 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR1N1Q8NGS0 311 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR5J2Q8NH18 312 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 WDR36Q8NI36 951 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 CYGBQ8WWM9 190 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HAS2Q92819 552 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ART4Q93070 314 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TMEM203Q969S6 136 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SLAMF9Q96A28 289 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ISG20Q96AZ6 181 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 CMTM5Q96DZ9 223 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FBXO17Q96EF6 278 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 C14orf79Q96F83 325 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CALML4Q96GE6 196 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 LRR1Q96L50 414 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 APOLD1Q96LR9 279 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PACRGQ96M98 296 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 Q96MT0 163 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MBOAT7Q96N66 472 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR2A14Q96R47 310 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ERGIC2Q96RQ1 377 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 EBNA1BP2Q99848 306 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 PRRT1Q99946 306 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 HSD17B14Q9BPX1 270 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CMSS1Q9BQ75 279 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 MGME1Q9BQP7 344 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 DPH7Q9BTV6 452 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TMEM208Q9BTX3 173 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 NDUFAF3Q9BU61 184 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 IFT27Q9BW83 186 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FUNDC2Q9BWH2 189 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 APOL6Q9BWW8 343 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 VN1R3Q9BXE9 311 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 NXF2Q9GZY0 626 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 LHPPQ9H008 270 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 DCSTAMPQ9H295 470 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 CHST8Q9H2A9 424 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 OR52A5Q9H2C5 316 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PPIL3Q9H2H8 161 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 TRABDQ9H4I3 376 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 PDZD7Q9H5P4 517 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 REEP4Q9H6H4 257 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 EXO5Q9H790 373 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 NOL11Q9H8H0 719 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 XPNPEP3Q9NQH7 507 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SMPD3Q9NY59 655 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 ARMCX1Q9P291 453 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 RNF7Q9UBF6 113 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 NUFIP1Q9UHK0 495 aaKnown RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 OSGIN1Q9UJX0 560 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 C3orf18Q9UK00 162 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 FZD10Q9ULW2 581 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 GABRQQ9UN88 632 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 TMEM184BQ9Y519 407 aaPredicted RBP3.03□□□□□ -1.92
VPS35-208ENST00000568612 CLCA3PQ9Y6N3 262 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 SPATA31D1Q6ZQQ2 1576 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 ARHGAP5Q13017 1502 aa3.03□□□□□ -1.92
VPS35-208ENST00000568612 MRC1P22897 1456 aa3.03□□□□□ -1.93
VPS35-208ENST00000568612 DOCK2Q92608 1830 aa3.03□□□□□ -1.93
VPS35-208ENST00000568612 ARFGEF2Q9Y6D5 1785 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 ROBO3Q96MS0 1386 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CACNA1FO60840 1977 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TEX13DA0A0J9YY54 714 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 A0A1B0GW55 424 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 TCRBV21S2A2A0A5A6 115 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 FABP12A6NFH5 140 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CBY3A6NI87 242 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CGB1A6NKQ9 187 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 AQP7P3A6NL99 342 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 MCIDASD6RGH6 385 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 UBE2Q2LH0YL09 131 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 K7EP13 123 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 CCSO14618 274 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 PAPSS1O43252 624 aaPredicted RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 PPIHO43447 177 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 GMFGO60234 142 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 LCMT2O60294 686 aaKnown RBP3.02□□□□□ -1.93
VPS35-208ENST00000568612 ENTPD3O75355 529 aa3.02□□□□□ -1.93
VPS35-208ENST00000568612 LRCH4O75427 683 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms