RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 EPB41P11171 864 aaKnown RBP3.6□□□□□ -1.83
LINC00560-201ENST00000564593 UMPSP11172 480 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 HTR2AP28223 471 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 MAGEA9P43362 315 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 LMO4P61968 165 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 TIMM50Q3ZCQ8 353 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 LINC01620Q4KN68 170 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 FAM74A3Q4VXF1 159 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 RNLSQ5VYX0 342 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 GCNT7Q6ZNI0 430 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 LANCL3Q6ZV70 420 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 CYS1Q717R9 158 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 HSD11B1LQ7Z5J1 315 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 CDC20BQ86Y33 519 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 GRAMD2AQ8IUY3 354 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 SLC39A11Q8N1S5 342 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 DTNBP1Q96EV8 351 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 AKR1E2Q96JD6 320 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 RANBP9Q96S59 729 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 PYGO2Q9BRQ0 406 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 CALHM2Q9HA72 323 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 FARSBQ9NSD9 589 aaKnown RBP3.6□□□□□ -1.83
LINC00560-201ENST00000564593 GALPQ9UBC7 116 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 RSPH14Q9UHP6 348 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 GMPPBQ9Y5P6 360 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 EFCAB6Q5THR3 1501 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 POGZQ7Z3K3 1410 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 SETBP1Q9Y6X0 1596 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 A2MP01023 1474 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 ZNF518AQ6AHZ1 1483 aa3.6□□□□□ -1.83
LINC00560-201ENST00000564593 SCAF11Q99590 1463 aaKnown RBP3.6□□□□□ -1.83
LINC00560-201ENST00000564593 LRPPRCP42704 1394 aaKnown RBP3.6□□□□□ -1.83
LINC00560-201ENST00000564593 A8MX80 341 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 PCCBP05166 539 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 ASNSP08243 561 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 H2AFZP0C0S5 128 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 CT45A10P0DMU9 189 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 XRCC1P18887 633 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 CDH5P33151 784 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 ANP32AP39687 249 aaKnown RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 FNTAP49354 379 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 NOVA1P51513 510 aaKnown RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 HSD17B7P56937 341 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 DSCR10P59022 87 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 ELP6Q0PNE2 266 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 CYP51A1Q16850 503 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 Q1RN00 199 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 CCDC57Q2TAC2 916 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 NCR3LG1Q68D85 454 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 KRTAP5-2Q701N4 177 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 ARMCX2Q7L311 632 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 BPIFB2Q8N4F0 458 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 Q8N9G6 341 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 ZSCAN4Q8NAM6 433 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 TYMSOSQ8TAI1 123 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 THRSPQ92748 146 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 C18orf25Q96B23 403 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 PPP1R16AQ96I34 528 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 C4orf36Q96KX1 117 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 FEM1AQ9BSK4 669 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 TMEM121Q9BTD3 319 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 POLR3FQ9H1D9 316 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 OPN3Q9H1Y3 402 aaPredicted RBP3.59□□□□□ -1.83
LINC00560-201ENST00000564593 RHOJQ9H4E5 214 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 SLC2A6Q9UGQ3 507 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 VWDEQ8N2E2 1590 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 HECW2Q9P2P5 1572 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 FANCAO15360 1455 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 USP32Q8NFA0 1604 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 MAP3K4Q9Y6R4 1608 aa3.59□□□□□ -1.83
LINC00560-201ENST00000564593 NINLQ9Y2I6 1382 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 LMTK2Q8IWU2 1503 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 ZSCAN5BA6NJL1 495 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 CLDN5O00501 218 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 SLC17A2O00624 439 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 BCL2L11O43521 198 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 TRIM3O75382 744 aaPredicted RBP3.59□□□□□ -1.84
LINC00560-201ENST00000564593 SLC2A10O95528 541 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 BCKDHAP12694 445 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 PGAM2P15259 253 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 PSMA2P25787 234 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 RPL4P36578 427 aaKnown RBP3.59□□□□□ -1.84
LINC00560-201ENST00000564593 MAGEA5P43359 124 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 KRTAP10-5P60370 271 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 NTHL1P78549 312 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 CHI3L2Q15782 390 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 MAPK6Q16659 721 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 DCST2Q5T1A1 773 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 LCE1FQ5T754 118 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 STAC2Q6ZMT1 411 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 P2RY8Q86VZ1 359 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 MCOLN2Q8IZK6 566 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 TM2D1Q9BX74 207 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 ELOVL4Q9GZR5 314 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 RPS10P5Q9NQ39 176 aa3.59□□□□□ -1.84
LINC00560-201ENST00000564593 VIRMAQ69YN4 1812 aaKnown RBP3.59□□□□□ -1.84
LINC00560-201ENST00000564593 BLMP54132 1417 aaPredicted RBP3.59□□□□□ -1.84
LINC00560-201ENST00000564593 SF3B1O75533 1304 aaKnown RBP eCLIP3.58□□□□□ -1.84
LINC00560-201ENST00000564593 ADGRL1O94910 1474 aa3.58□□□□□ -1.84
LINC00560-201ENST00000564593 CLTCL1P53675 1640 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms