RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SLC12A9Q9BXP2 914 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 SLC32A1Q9H598 525 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 TPT1P8Q9HAU6 139 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 EXOSC3Q9NQT5 275 aaKnown RBP12.43□□□□□ -0.42
CLK3-206ENST00000562078 PIPOXQ9P0Z9 390 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 MYEF2Q9P2K5 600 aaKnown RBP12.43□□□□□ -0.42
CLK3-206ENST00000562078 FLVCR2Q9UPI3 526 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 NUMA1Q14980 2115 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 DOCK9Q9BZ29 2069 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 COL4A3Q01955 1670 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 TMEM202A6NGA9 273 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 CD8B2A6NJW9 211 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 OR6C65A6NJZ3 312 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 KPNA3O00505 521 aaPredicted RBP12.43□□□□□ -0.42
CLK3-206ENST00000562078 SCAMP1O15126 338 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 YY2O15391 372 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 PCDH7O60245 1069 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 GADD45GO95257 159 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 NFATC1O95644 943 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 RAB36O95755 333 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 ANKRD34CP0C6C1 535 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 CD8BP10966 210 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 MST1P26927 711 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 PRKAR1BP31321 381 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 DLX2Q07687 328 aaPredicted RBP12.43□□□□□ -0.42
CLK3-206ENST00000562078 CRB2Q5IJ48 1285 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 TOMM5Q8N4H5 51 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 RPLP0P6Q8NHW5 317 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 C11orf24Q96F05 449 aaPredicted RBP12.43□□□□□ -0.42
CLK3-206ENST00000562078 EBPLQ9BY08 206 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 CYSLTR2Q9NS75 346 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 NTMQ9P121 344 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 CLEC1BQ9P126 229 aa12.43□□□□□ -0.42
CLK3-206ENST00000562078 ATG2BQ96BY7 2078 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 H3BN98 237 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 ARPC5O15511 151 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 CLDN9O95484 217 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 IGHV2-70P01814 119 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 CISD3P0C7P0 127 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 ELFN1P0C7U0 828 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 RD3LP0DJH9 198 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 GABRA1P14867 456 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 CALCRP30988 508 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 PITPNBP48739 271 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 CAPZA1P52907 286 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 METAP1P53582 386 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 MVDP53602 400 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 SNRPEP62304 92 aaKnown RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 DHODHQ02127 395 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 TPBGQ13641 420 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 IFI44LQ53G44 452 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 TMEM201Q5SNT2 666 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 PLEKHS1Q5SXH7 462 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 HES5Q5TA89 166 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 RNLSQ5VYX0 342 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 SLC6A19Q695T7 634 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 TANGO2Q6ICL3 276 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 OR5M10Q6IEU7 315 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 PARS2Q7L3T8 475 aaKnown RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 SLC30A8Q8IWU4 369 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 IQCF1Q8N6M8 205 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 HUS1BQ8NHY5 278 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 WRAP53Q9BUR4 548 aaKnown RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 SPATA5L1Q9BVQ7 753 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 SLC6A20Q9NP91 592 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 OR6C68A6NDL8 312 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 TLX2O43763 284 aaPredicted RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 SEMA7AO75326 666 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 PDYNP01213 254 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 S100A9P06702 114 aaKnown RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 IGFBP4P22692 258 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 S100A11P31949 105 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 LIMS1P48059 325 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 HTR4Q13639 388 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 GK2Q14410 553 aaPredicted RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 HEPACAMQ14CZ8 416 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 GCNT6Q5T4J0 391 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 B3GNTL1Q67FW5 361 aaPredicted RBP12.42□□□□□ -0.42
CLK3-206ENST00000562078 MTFR2Q6P444 385 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 DPPA4Q7L190 304 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 ASPGQ86U10 573 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 YAF2Q8IY57 180 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 NAGSQ8N159 534 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 TRAM1L1Q8N609 369 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 SAMD12Q8N8I0 201 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 OR5M3Q8NGP4 307 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 PIGKQ92643 395 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 PEX11GQ96HA9 241 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 YIPF4Q9BSR8 244 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 OR51M1Q9H341 326 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 RPS6KB2Q9UBS0 482 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 EPHA6Q9UF33 1036 aa12.42□□□□□ -0.42
CLK3-206ENST00000562078 TRDV1A0A1B0GX56 115 aa12.41□□□□□ -0.42
CLK3-206ENST00000562078 A8MVJ9 347 aa12.41□□□□□ -0.42
CLK3-206ENST00000562078 IGF2P01344 180 aa12.41□□□□□ -0.42
CLK3-206ENST00000562078 CRYBA1P05813 215 aa12.41□□□□□ -0.42
CLK3-206ENST00000562078 SRPRAP08240 638 aaKnown RBP12.41□□□□□ -0.42
CLK3-206ENST00000562078 MPC1LP0DKB6 136 aa12.41□□□□□ -0.42
CLK3-206ENST00000562078 NR2F6P10588 404 aa12.41□□□□□ -0.42
CLK3-206ENST00000562078 UGT2B7P16662 529 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms