RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 HOXB9P17482 250 aaPredicted RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 NCF2P19878 526 aaPredicted RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 CAPN3P20807 821 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 DPP4P27487 766 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 DCTP40126 519 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 MAGEA8P43361 318 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 MVDP53602 400 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 ATP12AP54707 1039 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 NCALDP61601 193 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 TXNL4AP83876 142 aaKnown RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 ADORA2A-AS1P86434 159 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 C17orf67Q0P5P2 114 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 FUT5Q11128 374 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 CD226Q15762 336 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 ARHGAP11BQ3KRB8 267 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 GTDC1Q4AE62 458 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 GXYLT1Q4G148 440 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 FLYWCH1Q4VC44 716 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 AGKQ53H12 422 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 KLHL26Q53HC5 615 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 COX20Q5RI15 118 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 C6orf10Q5SRN2 563 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 DCST1Q5T197 706 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.5□□□□□ -1.05
LDLR-211ENST00000560173 ATAD3BQ5T9A4 648 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 VASNQ6EMK4 673 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 SLC2A7Q6PXP3 512 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 RPTNQ6XPR3 784 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 NCCRP1Q6ZVX7 275 aaPredicted RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 C16orf62Q7Z3J2 963 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 MISPQ8IVT2 679 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 EID3Q8N140 333 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 MARVELD2Q8N4S9 558 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 GATSQ8NAP1 163 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 OR14L1PQ8NHC6 308 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 PNPT1Q8TCS8 783 aaKnown RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 ZFP90Q8TF47 636 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 DUSP19Q8WTR2 217 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 PHF10Q8WUB8 498 aaKnown RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 RAB8BQ92930 207 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 SPDL1Q96EA4 605 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 UGT2B28Q9BY64 529 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 NMUR2Q9GZQ4 415 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 HOXD1Q9GZZ0 328 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 PAIP1Q9H074 479 aaKnown RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 HHATLQ9HCP6 504 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 EXD2Q9NVH0 621 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 MED11Q9P086 117 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 CCDC167Q9P0B6 97 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 TAGLN3Q9UI15 199 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 DKKL1Q9UK85 242 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 ACAD8Q9UKU7 415 aa8.5□□□□□ -1.05
LDLR-211ENST00000560173 MRPS18CQ9Y3D5 142 aaKnown RBP8.5□□□□□ -1.05
LDLR-211ENST00000560173 NCOA6Q14686 2063 aaPredicted RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 ABCA12Q86UK0 2595 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 A0A096LPI6 279 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 CENPVL1A0A0U1RR11 272 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 FIGNL2A6NMB9 653 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 OIP5O43482 229 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 KIAA0513O60268 411 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 FCMRO60667 390 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 WDR1O75083 606 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 TNFRSF21O75509 655 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 STX11O75558 287 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ANP32DO95626 131 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ACTL6AO96019 429 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 HPGDP15428 266 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 NQO1P15559 274 aaKnown RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 BMP7P18075 431 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ACVR2AP27037 513 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 GCKP35557 465 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ANXA11P50995 505 aaKnown RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 GFRA1P56159 465 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 DSCR4P56555 118 aaPredicted RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 RIPPLY3P57055 190 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 B3GALT5-AS1P59052 145 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 GANABQ14697 944 aaKnown RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 MAPRE2Q15555 327 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ZNF630Q2M218 657 aaPredicted RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 DNAL1Q4LDG9 190 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 LRIF1Q5T3J3 769 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 WLSQ5T9L3 541 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 AP1ARQ63HQ0 302 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ZNF585AQ6P3V2 769 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ASRGL1Q7L266 308 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 OLIG3Q7RTU3 272 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 IFNEQ86WN2 208 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 MSRB3Q8IXL7 192 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ULK2Q8IYT8 1036 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 RPRMLQ8N4K4 120 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ZNF527Q8NB42 609 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 XAGE5Q8WWM1 108 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 ITLN2Q8WWU7 325 aaPredicted RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 ABTB1Q969K4 478 aaPredicted RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 ROPN1LQ96C74 230 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 C1GALT1C1Q96EU7 318 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 AURKBQ96GD4 344 aaPredicted RBP8.49□□□□□ -1.05
LDLR-211ENST00000560173 SFXN2Q96NB2 322 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 TIMP4Q99727 224 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 PRDM14Q9GZV8 571 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms