RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-238ENST00000556288 RAE1P78406 368 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 MRPS35P82673 323 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PLIN5Q00G26 463 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PMP22Q01453 160 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PLGLB1Q02325 96 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 GALNT1Q10472 559 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 TBL3Q12788 808 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 E2F2Q14209 437 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 HEPACAMQ14CZ8 416 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 EXOSC7Q15024 291 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 RPS6KA2Q15349 733 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 TOMM20Q15388 145 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 OR1C1Q15619 314 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 EIF2S3LQ2VIR3 472 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ATP6AP1LQ52LC2 224 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PRR30Q53SZ7 412 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 C10orf62Q5T681 223 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 IL23RQ5VWK5 629 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ATG16L1Q676U5 607 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 OR52E8Q6IFG1 317 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 SLC25A25Q6KCM7 469 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ANKRD26P1Q6NSI1 321 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 NOXRED1Q6NXP6 359 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 TMEM64Q6YI46 380 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 HPS6Q86YV9 775 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 MED12LQ86YW9 2145 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PRR22Q8IZ63 422 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ST13P4Q8IZP2 240 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 LIX1Q8N485 282 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 FAM98AQ8NCA5 519 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 C7orf57Q8NEG2 295 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 NFAM1Q8NET5 270 aaPredicted RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ELP5Q8TE02 316 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 GRHL3Q8TE85 626 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 TWIST2Q8WVJ9 160 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 HAS2Q92819 552 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 SNRNP40Q96DI7 357 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PGM2Q96G03 612 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ART5Q96L15 291 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 TSSK3Q96PN8 268 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 SIGLEC12Q96PQ1 595 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 PELOQ9BRX2 385 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 TRMOQ9BU70 441 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 C1orf50Q9BV19 199 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ACTRT3Q9BYD9 372 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 HES7Q9BYE0 225 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 DEFB127Q9H1M4 99 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 EXO5Q9H790 373 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ANKRA2Q9H9E1 313 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 SACM1LQ9NTJ5 587 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 HPF1Q9NWY4 346 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 C1orf109Q9NX04 203 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 HEY2Q9UBP5 337 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 SH3BGRL2Q9UJC5 107 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 ENTPD4Q9Y227 616 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 EIF3LQ9Y262 564 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 YARS2Q9Y2Z4 477 aaKnown RBP4.29□□□□□ -1.72
ATXN3-238ENST00000556288 NBASA2RRP1 2371 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 LOC400499M0QZD8 3231 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 MED12Q93074 2177 aa4.29□□□□□ -1.72
ATXN3-238ENST00000556288 IGKV3D-11A0A0A0MRZ8 115 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 GOLGA8QA0A0J9YX86 632 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 GOLGA8OA6NCC3 632 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 TMEM114B3SHH9 223 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 NPIPA5E9PKD4 350 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 GOLGA8NF8WBI6 632 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 KLRC4-KLRK1H3BQV0 150 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 ZNHIT1O43257 154 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 FRS3O43559 492 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 CDC40O60508 579 aaKnown RBP eCLIP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 REM1O75628 298 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 OR6B1O95007 311 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 CPSF4O95639 269 aaKnown RBP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 DDAH2O95865 285 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 CRYABP02511 175 aaKnown RBP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 P04436 131 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 CHRM2P08172 466 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 ABCB1P08183 1280 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 CYC1P08574 325 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 FGF4P08620 206 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 CT62P0C5K7 136 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 PEX2P28328 305 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 NTSP30990 170 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 SOX3P41225 446 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 TNFSF10P50591 281 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 HLCSP50747 726 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 GPR143P51810 404 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 ZNF134P52741 427 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 TRA2BP62995 288 aaKnown RBP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 GABPB1Q06547 395 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 ZNF763Q0D2J5 394 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 SF3A3Q12874 501 aaKnown RBP eCLIP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 HSPB3Q12988 150 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 RAB32Q13637 225 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 GALEQ14376 348 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 LTB4RQ15722 352 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 NNATQ16517 81 aa4.28□□□□□ -1.72
ATXN3-238ENST00000556288 RFTN2Q52LD8 501 aaPredicted RBP4.28□□□□□ -1.72
ATXN3-238ENST00000556288 TRMT12Q53H54 448 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms