RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TMEM41AQ96HV5 264 aa19.35■□□□□ 0.69
VPS29-206ENST00000549578 TAAR6Q96RI8 345 aa19.35■□□□□ 0.69
VPS29-206ENST00000549578 THTPAQ9BU02 230 aa19.35■□□□□ 0.69
VPS29-206ENST00000549578 PPP4R1LQ9P1A2 415 aa19.35■□□□□ 0.69
VPS29-206ENST00000549578 EGFL7Q9UHF1 273 aa19.35■□□□□ 0.69
VPS29-206ENST00000549578 PRPF19Q9UMS4 504 aaKnown RBP19.35■□□□□ 0.69
VPS29-206ENST00000549578 BOKQ9UMX3 212 aaPredicted RBP19.35■□□□□ 0.69
VPS29-206ENST00000549578 H3BNH8 94 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 SNPHO15079 494 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 OIP5O43482 229 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 GMFGO60234 142 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 BCAS1O75363 584 aaPredicted RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 PDE5AO76074 875 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 OPN1SWP03999 348 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 HSD17B1P14061 328 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 NID1P14543 1247 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 FGFBP1Q14512 234 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 RPUSD3Q6P087 351 aaKnown RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 ZFP62Q8NB50 900 aaPredicted RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 FIG4Q92562 907 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 SH3YL1Q96HL8 342 aaPredicted RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 CLPTM1LQ96KA5 538 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 GNRHR2Q96P88 292 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 ZNF607Q96SK3 696 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 RSPO3Q9BXY4 272 aaPredicted RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 CACYBPQ9HB71 228 aaKnown RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 ZFP64Q9NPA5 681 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 SDHAF3Q9NRP4 125 aa19.34■□□□□ 0.69
VPS29-206ENST00000549578 ZNF443Q9Y2A4 671 aaPredicted RBP19.34■□□□□ 0.69
VPS29-206ENST00000549578 M0QX08 132 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 GSTA4O15217 222 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 SORBS2O94875 1100 aaKnown RBP19.33■□□□□ 0.68
VPS29-206ENST00000549578 PABPC4LP0CB38 370 aaKnown RBP19.33■□□□□ 0.68
VPS29-206ENST00000549578 NCK1P16333 377 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 HTR1EP28566 365 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 RASSF2P50749 326 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 CRYBA2P53672 197 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 NCALDP61601 193 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 KCNJ10P78508 379 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 PLGLB1Q02325 96 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 PLAURQ03405 335 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 C17orf67Q0P5P2 114 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 LIN52Q52LA3 116 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 ZNF311Q5JNZ3 666 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 TIGD3Q6B0B8 471 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 ZNF836Q6ZNA1 936 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 CCDC80Q76M96 950 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 PATL1Q86TB9 770 aaKnown RBP19.33■□□□□ 0.68
VPS29-206ENST00000549578 LSM14AQ8ND56 463 aaKnown RBP19.33■□□□□ 0.68
VPS29-206ENST00000549578 OR1J4Q8NGS1 313 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 OIT3Q8WWZ8 545 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 TTTY12Q9BZ98 90 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.33■□□□□ 0.68
VPS29-206ENST00000549578 RLIMQ9NVW2 624 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 SEC14L3Q9UDX4 400 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 CARD8Q9Y2G2 431 aa19.33■□□□□ 0.68
VPS29-206ENST00000549578 FAM166BA8MTA8 275 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 GTPBP1O00178 669 aaKnown RBP19.32■□□□□ 0.68
VPS29-206ENST00000549578 CXCR6O00574 342 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 SERPINB7O75635 380 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 PDE9AO76083 593 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 MFN2O95140 757 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 CSTAP01040 98 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 THBS1P07996 1170 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 RFPL3SP0C7P2 107 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 UBL4AP11441 157 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 ZNF117Q03924 483 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 DMTNQ08495 405 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 LARS2Q15031 903 aaKnown RBP19.32■□□□□ 0.68
VPS29-206ENST00000549578 INAQ16352 499 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 RNFT1Q5M7Z0 435 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 MRPL2Q5T653 305 aaKnown RBP19.32■□□□□ 0.68
VPS29-206ENST00000549578 EIF3MQ7L2H7 374 aaKnown RBP19.32■□□□□ 0.68
VPS29-206ENST00000549578 PLCZ1Q86YW0 608 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 ARMC8Q8IUR7 673 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 MISPQ8IVT2 679 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 ARHGAP24Q8N264 748 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 SMYD1Q8NB12 490 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 TAMM41Q96BW9 452 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 ARSGQ96EG1 525 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 SPATA5L1Q9BVQ7 753 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 MED11Q9P086 117 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 FBXL2Q9UKC9 423 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 IFT52Q9Y366 437 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 PRRC2CQ9Y520 2896 aaKnown RBP19.32■□□□□ 0.68
VPS29-206ENST00000549578 KALRNO60229 2985 aa19.32■□□□□ 0.68
VPS29-206ENST00000549578 HCRTR2O43614 444 aa19.31■□□□□ 0.68
VPS29-206ENST00000549578 CYP7B1O75881 506 aa19.31■□□□□ 0.68
VPS29-206ENST00000549578 GLSO94925 669 aaPredicted RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 UBTFL6P0CB48 400 aaPredicted RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 GGT1P19440 569 aa19.31■□□□□ 0.68
VPS29-206ENST00000549578 ELAVL4P26378 380 aaKnown RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 KDELR2P33947 212 aa19.31■□□□□ 0.68
VPS29-206ENST00000549578 EEF1A1P68104 462 aaKnown RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 LRRC23Q53EV4 343 aaPredicted RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 CBLN3Q6UW01 205 aa19.31■□□□□ 0.68
VPS29-206ENST00000549578 CISD2Q8N5K1 135 aaKnown RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 TNIP2Q8NFZ5 429 aa19.31■□□□□ 0.68
VPS29-206ENST00000549578 CNOT9Q92600 299 aaKnown RBP19.31■□□□□ 0.68
VPS29-206ENST00000549578 KLHDC3Q9BQ90 382 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms