RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TMEM81Q6P7N7 255 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 BMP8AQ7Z5Y6 402 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 GID4Q8IVV7 300 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 SLC7A13Q8TCU3 470 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 SLC38A5Q8WUX1 472 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 MYEOVQ96EZ4 313 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 TRMT61AQ96FX7 289 aaKnown RBP13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CALML5Q9NZT1 146 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 Q9Y3F1 56 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 EP400Q96L91 3159 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF840PA6NDX5 716 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CCDC85CA6NKD9 419 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 C1orf196B1AJZ1 125 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 FBXO45P0C2W1 286 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CSNK2A2P19784 350 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-215ENST00000544547 ELAVL4P26378 380 aaKnown RBP13.38□□□□□ -0.27
LIMS1-215ENST00000544547 HOXD9P28356 352 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CSNK1DP48730 415 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CLLU1OSQ5K130 101 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 ESX1Q8N693 406 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 NEK7Q8TDX7 302 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 RNF31Q96EP0 1072 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 PELOQ9BRX2 385 aaKnown RBP13.38□□□□□ -0.27
LIMS1-215ENST00000544547 PCBD2Q9H0N5 130 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 C12orf10Q9HB07 376 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 NIT2Q9NQR4 276 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 RFXAPO00287 272 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 MAS1P04201 325 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CD2P06729 351 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 HSD3B2P26439 372 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 DLX5P56178 289 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 RAP2BP61225 183 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 TNFRSF17Q02223 184 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 C3orf38Q5JPI3 329 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 HBMQ6B0K9 141 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CRTC1Q6UUV9 634 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 MRPL10Q7Z7H8 261 aaKnown RBP13.38□□□□□ -0.27
LIMS1-215ENST00000544547 CALHM3Q86XJ0 350 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 SLC22A8Q8TCC7 542 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 SLC38A3Q99624 504 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 GSKIPQ9P0R6 139 aa13.38□□□□□ -0.27
LIMS1-215ENST00000544547 PPM1BO75688 479 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 C1QCP02747 245 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 GIMD1P0DJR0 217 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 UBE2MP61081 183 aaKnown RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 KLHL26Q53HC5 615 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PLEKHS1Q5SXH7 462 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 MANEALQ5VSG8 457 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF546Q86UE3 836 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 JAZF1Q86VZ6 243 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 COX18Q8N8Q8 333 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 CYB5D2Q8WUJ1 264 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 LINC00052Q96N35 136 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 C1QTNF3Q9BXJ4 246 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 DPH1Q9BZG8 443 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 TPRP12270 2363 aaKnown RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 TRDV1A0A1B0GX56 115 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 FEZF1A0PJY2 475 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 CHP2O43745 196 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 ARAFP10398 606 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PSMB10P40306 273 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 SP140Q13342 867 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 FAM27D1Q5T7N8 215 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 RFLNAQ6ZTI6 216 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 CD300LFQ8TDQ1 290 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 MAFIPQ8WZ33 124 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 UCN3Q969E3 161 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 RGMAQ96B86 450 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 C4orf36Q96KX1 117 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 GPER1Q99527 375 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 CRB3Q9BUF7 120 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PRRG4Q9BZD6 226 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 C14orf105Q9NVL8 296 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 WDR45Q9Y484 360 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 A0A0B4J203 849 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 FOSL2P15408 326 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 S100A2P29034 98 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 RBMS1P29558 406 aaKnown RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 HOXC13P31276 330 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 MPIP34949 423 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PAQR8Q8TEZ7 354 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 GREB1LQ9C091 1923 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 SIPA1L1O43166 1804 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 NPIPB15A6NHN6 443 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 DRGXA6NNA5 263 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 APOC1P02654 83 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 AHCYP23526 432 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PRKXP51817 358 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PDGFRLQ15198 375 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 WDR53Q7Z5U6 358 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 SDR16C5Q8N3Y7 309 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 OR52E4Q8NGH9 312 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 WFIKKN2Q8TEU8 576 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 GCDHQ92947 438 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 ADAD1Q96M93 576 aaKnown RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 PINK1Q9BXM7 581 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 POLDIP3Q9BY77 421 aaKnown RBP13.37□□□□□ -0.27
LIMS1-215ENST00000544547 COMMD4Q9H0A8 199 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 SLC45A1Q9Y2W3 748 aa13.37□□□□□ -0.27
LIMS1-215ENST00000544547 TRAV20A0A0B4J274 112 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms