RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SLCO1B1Q9Y6L6 691 aa2.35□□□□□ -2.03
CD44-234ENST00000531873 FRMPD3Q5JV73 1810 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 TRAV26-1A0A087WT03 109 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 A0A1W2PNV4 684 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 SAGE2PA6NJ88 616 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 TAPBPO15533 448 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 LRRTM2O43300 516 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 B4GALT2O60909 372 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ZNF253O75346 499 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 TRIM3O75382 744 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 SERPINB2P05120 415 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 HOXD4P09016 255 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 HBQ1P09105 142 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 H2BFMP0C1H6 154 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 CT45A10P0DMU9 189 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ATP5A1P25705 553 aaKnown RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 PTBP1P26599 531 aaKnown RBP eCLIP2.34□□□□□ -2.03
CD44-234ENST00000531873 HMGCLP35914 325 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ACVR1BP36896 505 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 GRIA1P42261 906 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 P2RY1P47900 373 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 CASP4P49662 377 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ARHGDIBP52566 201 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ERVPABLB-1P60509 514 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 RND3P61587 244 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 FCHO2Q0JRZ9 810 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ST3GAL3Q11203 375 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 RAB40BQ12829 278 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ZNF154Q13106 437 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 C1orf61Q13536 156 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 MXD4Q14582 209 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 LAGE3Q14657 143 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ABRAXAS2Q15018 415 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 CFAP221Q4G0U5 840 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 CCDC183Q5T5S1 534 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 TMEM225Q6GV28 225 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ZSCAN25Q6NSZ9 544 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 SCYL2Q6P3W7 929 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 KCNIP4Q6PIL6 250 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 Q6ZPB1 254 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 TMUB2Q71RG4 321 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 IFNEQ86WN2 208 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 UBQLNLQ8IYU4 475 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 SLC22A18ASQ8N1D0 253 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 BHLHE23Q8NDY6 225 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 STXBP6Q8NFX7 210 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 OR2T33Q8NG76 320 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 OR9A4Q8NGU2 314 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 ZNF689Q96CS4 500 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 ZNF599Q96NL3 588 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 RANBP9Q96S59 729 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 NPY6RQ99463 290 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 GCOM2Q9BZD3 368 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 ZBP1Q9H171 429 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 GLIPR2Q9H4G4 154 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 EXOSC3Q9NQT5 275 aaKnown RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 AIPL1Q9NZN9 384 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 C6orf203Q9P0P8 240 aaPredicted RBP2.34□□□□□ -2.03
CD44-234ENST00000531873 ARMCX1Q9P291 453 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 PRODH2Q9UF12 536 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 SLC2A6Q9UGQ3 507 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 RASD1Q9Y272 281 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 POLDIP2Q9Y2S7 368 aa2.34□□□□□ -2.03
CD44-234ENST00000531873 FRMPD4Q14CM0 1322 aa2.34□□□□□ -2.04
CD44-234ENST00000531873 RLFQ13129 1914 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 XKRY2A2RUG3 117 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 LRP5LA4QPB2 252 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 OR6C65A6NJZ3 312 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 ACOD1A6NK06 481 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 SRRM5B3KS81 715 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 SAP18O00422 153 aaKnown RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 SLC17A2O00624 439 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 NBR2O15453 112 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 MSH4O15457 936 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 ZNF264O43296 627 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 ZNF208O43345 1280 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 LATO43561 262 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 HPP00738 406 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 ZNF883P0CG24 379 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 CD80P33681 288 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 GNPDA1P46926 289 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 AP3M2P53677 418 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 BDH1Q02338 343 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 OC90Q02509 493 aaPredicted RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 RIPPLY1Q0D2K3 151 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 GANABQ14697 944 aaKnown RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 SLC10A1Q14973 349 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 ZMYND11Q15326 602 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 FCN2Q15485 313 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 CYP51A1Q16850 503 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 MICAQ29983 383 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 MRGPRG-AS1Q2M3A8 158 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 SNAI3Q3KNW1 292 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 PHYHD1Q5SRE7 291 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 DCST2Q5T1A1 773 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 TPGS2Q68CL5 300 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 UFSP1Q6NVU6 142 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 FAAP20Q6NZ36 180 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 FAHD2BQ6P2I3 314 aaPredicted RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 Q6ZTC4 211 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms