RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TPSAB1Q15661 275 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 PTGISQ16647 500 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ODF4Q2M2E3 257 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TMEM44Q2T9K0 475 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ITPRIPL2Q3MIP1 535 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 SLC25A53Q5H9E4 307 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 FAM46CQ5VWP2 391 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 CST9Q5W186 159 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 CCDC137Q6PK04 289 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 CDHR3Q6ZTQ4 885 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 FOXL2NBQ6ZUU3 175 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 GPRIN3Q6ZVF9 776 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 FRA10AC1Q70Z53 315 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 LHFPL4Q7Z7J7 247 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TMEM139Q8IV31 216 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 GPR65Q8IYL9 337 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ST13P4Q8IZP2 240 aaPredicted RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 THEM5Q8N1Q8 247 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 METTL27Q8N6F8 245 aaPredicted RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 GPRC5AQ8NFJ5 357 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 UBA3Q8TBC4 463 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 PROX1Q92786 737 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 DCPSQ96C86 337 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 FAM122AQ96E09 287 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 MARK4Q96L34 752 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TSNARE1Q96NA8 513 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TGS1Q96RS0 853 aaKnown RBP4.23□□□□□ -1.73
CD44-220ENST00000525688 CBWD1Q9BRT8 395 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 TMEM175Q9BSA9 504 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 SLC2A11Q9BYW1 496 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 MIS12Q9H081 205 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ZMYND12Q9H0C1 365 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 HIPK2Q9H2X6 1198 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 SNX25Q9H3E2 840 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 RAB9BQ9NP90 201 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ZDHHC2Q9UIJ5 367 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 DAPK2Q9UIK4 370 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 GGA2Q9UJY4 613 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 PIGLQ9Y2B2 252 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 ARAP2Q8WZ64 1704 aa4.23□□□□□ -1.73
CD44-220ENST00000525688 SALL1Q9NSC2 1324 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 IQANK1A0A1B0GTG1 560 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 TRPC5OSA6NMA1 111 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SNTNA6NMZ2 147 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 C9JVG2 144 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 TRAPPC3O43617 180 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 XPNPEP2O43895 674 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 PRKNO60260 465 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 FRAT2O75474 233 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 RBBP9O75884 186 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 LCA5LO95447 670 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 GSRP00390 522 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 GOT2P00505 430 aaKnown RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 CHRNGP07510 517 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SFTPBP07988 381 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SNHG28P0DPA3 235 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 IL32P24001 234 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 EPHA2P29317 976 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 NAA10P41227 235 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 MAGEA11P43364 429 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SLC6A8P48029 635 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 PLOD1Q02809 727 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 LRRC63Q05C16 580 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 LGALS3BPQ08380 585 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 ZNF415Q09FC8 603 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 ILF2Q12905 390 aaKnown RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 ITGB3BPQ13352 177 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 MSLNQ13421 630 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 DCAF4L1Q3SXM0 396 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 MOGAT2Q3SYC2 334 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 PHLDA2Q53GA4 152 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 AGKQ53H12 422 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 CMPK2Q5EBM0 449 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SAPCD1Q5SSQ6 148 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 HHATQ5VTY9 493 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 TMEM225Q6GV28 225 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SPSB3Q6PJ21 355 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 NFE4Q86UQ8 179 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 CBWD2Q8IUF1 395 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 FAM86B1Q8N7N1 296 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 OR4K1Q8NGD4 311 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 OR1J1Q8NGS3 322 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 OLIG1Q8TAK6 271 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 PHOSPHO2Q8TCD6 241 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 RAET1EQ8TD07 263 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 PIGCQ92535 297 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 SUSD6Q92537 303 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 P2RX5Q93086 422 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 RFT1Q96AA3 541 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 MRGPRFQ96AM1 343 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 PINX1Q96BK5 328 aaKnown RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 LMLNQ96KR4 655 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 FAM20AQ96MK3 541 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 GPR137Q96N19 417 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 VPS35Q96QK1 796 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 CCT8L2Q96SF2 557 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 TRAF4Q9BUZ4 470 aaPredicted RBP4.22□□□□□ -1.73
CD44-220ENST00000525688 SLC39A8Q9C0K1 460 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 NDEL1Q9GZM8 345 aa4.22□□□□□ -1.73
CD44-220ENST00000525688 MRM3Q9HC36 420 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms