RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KAT7O95251 611 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 MT-ND4P03905 459 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF888P0CJ79 500 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 RBMS1P29558 406 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 GDI2P50395 445 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 VSX2P58304 361 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 PDE7AQ13946 482 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ZER1Q7Z7L7 766 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 TMIEQ8NEW7 156 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 PNO1Q9NRX1 252 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 HRASLS2Q9NWW9 162 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF443Q9Y2A4 671 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 C5orf51A6NDU8 294 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 HEPACAM2A8MVW5 462 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 DSCR3O14972 297 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CDC123O75794 336 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ALX3O95076 343 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 TFP02787 698 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 S100A9P06702 114 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CPEP16870 476 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 TRIM23P36406 574 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 GPR143P51810 404 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ART1P52961 327 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 IFITM3Q01628 133 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 FCN2Q15485 313 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 FXNQ16595 210 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 DECR1Q16698 335 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 WASH2PQ6VEQ5 465 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC39A5Q6ZMH5 540 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 QSOX2Q6ZRP7 698 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF765Q7L2R6 523 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF619Q8N2I2 560 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 OR52E1Q8NGJ3 308 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CREB3L4Q8TEY5 395 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 RAD9AQ99638 391 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SRRQ9GZT4 340 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 RXFP3Q9NSD7 469 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 NOP16Q9Y3C1 178 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 MN1Q10571 1320 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 PTPRFP10586 1907 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 TRAV27A0A087WT01 109 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 FZD7O75084 574 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CSF3P09919 207 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 TYRP1P17643 537 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 FNTBP49356 437 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 REEP5Q00765 189 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF750Q32MQ0 723 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 WDR45BQ5MNZ6 344 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 NXNL2Q5VZ03 156 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 GPR135Q8IZ08 494 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ARMC10Q8N2F6 343 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 KIAA1958Q8N8K9 716 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 INO80EQ8NBZ0 244 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ARRDC3Q96B67 414 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 KCTD12Q96CX2 325 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 OR2M2Q96R28 347 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CXXC1Q9P0U4 656 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 NAALAD2Q9Y3Q0 740 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 LOC100509620A0A075B734 347 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ARRDC5A6NEK1 342 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 RNGTTO60942 597 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CD160O95971 181 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 HTR1FP30939 366 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SHC2P98077 582 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 KLHL26Q53HC5 615 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 KIAA1211LQ6NV74 962 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 FAM198BQ6UWH4 519 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 LYPD4Q6UWN0 246 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 Q6ZNB5 142 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 TPRA1Q86W33 373 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SERPINA12Q8IW75 414 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC35F2Q8IXU6 374 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CDRT4Q8N9R6 151 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ELMOD3Q96FG2 381 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 KATNB1Q9BVA0 655 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 ABCG4Q9H172 646 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 CENPMQ9NSP4 180 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 POLHQ9Y253 713 aa7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 FARSAQ9Y285 508 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-216ENST00000512820 NDUFB2O95178 105 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 TM4SF4P48230 202 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 MTNR1BP49286 362 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 LIM2P55344 173 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 METTL11BQ5VVY1 283 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 HACD4Q5VWC8 232 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 ATCAYQ86WG3 371 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SDR9C7Q8NEX9 313 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR2A14Q96R47 310 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 INSM2Q96T92 566 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SLC6A15Q9H2J7 730 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 INPP5EQ9NRR6 644 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR6C2Q9NZP2 312 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 OR51B4Q9Y5P0 310 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 NOX1Q9Y5S8 564 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 IER3IP1Q9Y5U9 82 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 A0A087WUU8 490 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 FAM171A2A8MVW0 826 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 TMEM150CB9EJG8 249 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 K7ESM1 405 aa7.87□□□□□ -1.15
LIMCH1-216ENST00000512820 SYT5O00445 386 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms