RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FXYD6P3P58550 94 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 PPP2CBP62714 309 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 PPP2CAP67775 309 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 EEF1A1P68104 462 aaKnown RBP16.7■□□□□ 0.26
VIM-206ENST00000487938 TSACCQ96A04 125 aaPredicted RBP16.7■□□□□ 0.26
VIM-206ENST00000487938 OR2M4Q96R27 311 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 HCAR1Q9BXC0 346 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 PAQR5Q9NXK6 330 aaPredicted RBP16.7■□□□□ 0.26
VIM-206ENST00000487938 HEBP2Q9Y5Z4 205 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 CLCA3PQ9Y6N3 262 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 K7EQS6 105 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 LDB3O75112 727 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 REM1O75628 298 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 SLC35G6P0C7Q6 338 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 HTR2AP28223 471 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 MAP2K3P46734 347 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 ADPRHP54922 357 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 KLHL12Q53G59 568 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 NUDT18Q6ZVK8 323 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 UBE2Q1Q7Z7E8 422 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 OR2L13Q8N349 312 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 TMEM99Q8N816 258 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 OR52N1Q8NH53 320 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 OR1E3Q8WZA6 343 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 KLF15Q9UIH9 416 aa16.7■□□□□ 0.26
VIM-206ENST00000487938 FAM25AB3EWG3 89 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 FAM25CB3EWG5 89 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 FAM25GB3EWG6 89 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 PEX12O00623 359 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 PAICSP22234 425 aaKnown RBP16.69■□□□□ 0.26
VIM-206ENST00000487938 ACSM1Q08AH1 577 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 CDK10Q15131 360 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 OR1Q1Q15612 314 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 TMEM44Q2T9K0 475 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 FCRLBQ6BAA4 426 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 PLET1Q6UQ28 207 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 NTMQ9P121 344 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 NLKQ9UBE8 527 aa16.69■□□□□ 0.26
VIM-206ENST00000487938 LOC105369274A0A096LPK9 316 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 LOC102723532A0A0G2JNH3 316 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 LRRC72A6NJI9 287 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 J3QRE1 110 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 RNF13O43567 381 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 IFI30P13284 250 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 EN2P19622 333 aaPredicted RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 DUSP8Q13202 625 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 IDNKQ5T6J7 187 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 NR2C2APQ86WQ0 139 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 OR4N4Q8N0Y3 316 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 OR10G6Q8NH81 332 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 FANK1Q8TC84 345 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 SMAP2Q8WU79 429 aaPredicted RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 TMEM246Q9BRR3 403 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 ALG8Q9BVK2 526 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 SIDT1Q9NXL6 827 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 KCNE5Q9UJ90 142 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 GTPBP1O00178 669 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 HCN1O60741 890 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 AGR2O95994 175 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 CPMP14384 443 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 POLR2CP19387 275 aaPredicted RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 KIR2DL1P43626 348 aaPredicted RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 SLC16A1P53985 500 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 SUZ12Q15022 739 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 PRRT3Q5FWE3 981 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 MRPL2Q5T653 305 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 PARM1Q6UWI2 310 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 MEPCEQ7L2J0 689 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 PRSS41Q7RTY9 318 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 RANBP3LQ86VV4 465 aaPredicted RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 ACBD7Q8N6N7 88 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 ASCC1Q8N9N2 400 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 NT5CQ8TCD5 201 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 OR2A5Q96R48 311 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 CD180Q99467 661 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 TIMP4Q99727 224 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 COQ7Q99807 217 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 C1QTNF7Q9BXJ2 289 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 ASB6Q9NWX5 421 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 PHF11Q9UIL8 331 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 DAPP1Q9UN19 280 aa16.68■□□□□ 0.26
VIM-206ENST00000487938 MRPS2Q9Y399 296 aaKnown RBP16.68■□□□□ 0.26
VIM-206ENST00000487938 TRAPPC13A5PLN9 417 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 B3GALT2O43825 422 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 MRPL3P09001 348 aaKnown RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 TRAPPC2P0DI81 140 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TRAPPC2BP0DI82 140 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TBXA2RP21731 343 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TLX1P31314 330 aaPredicted RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 TATDN3Q17R31 274 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 NIPAL3Q6P499 406 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 MZT2AQ6P582 158 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 FIGNL1Q6PIW4 674 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 NOXA1Q86UR1 476 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TMEM239Q8WW34 195 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 FGF14Q92915 247 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 TM4SF19Q96DZ7 209 aa16.67■□□□□ 0.26
VIM-206ENST00000487938 SCARF2Q96GP6 870 aaPredicted RBP16.67■□□□□ 0.26
VIM-206ENST00000487938 RNF170Q96K19 258 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms