RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 SIX4Q9UIU6 781 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 UTS2RQ9UKP6 389 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 RAB23Q9ULC3 237 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PRPF19Q9UMS4 504 aaKnown RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PLLPQ9Y342 182 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF175Q9Y473 711 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 PCDHGB1Q9Y5G3 927 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 TIMM10BQ9Y5J6 103 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 ETV7Q9Y603 341 aa3.33□□□□□ -1.88
SF3B1-205ENST00000424674 SPIN1Q9Y657 262 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-205ENST00000424674 A0A1B0GW15 77 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 A0A1W2PRD5 423 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 C15orf62A8K5M9 175 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ERI2A8K979 691 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CENPXA8MT69 81 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 KRTAP29-1A8MX34 341 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 BTBD19C9JJ37 291 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 PRAMEF26H0Y7S4 382 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 OR7A17O14581 309 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 RFXANKO14593 260 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 WNT9BO14905 357 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CNOT3O75175 753 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 HSBP1O75506 76 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 JTBO76095 146 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 PAPSS2O95340 614 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 LATS1O95835 1130 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ASS1P00966 412 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 IL6P05231 212 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SLC35E2BP0CK96 405 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SLC35E2P0CK97 266 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SMIM10L1P0DMW3 83 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CYP2D6P10635 497 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ARSBP15848 533 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CA4P22748 312 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 AADACP22760 399 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CERS1P27544 350 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CD1CP29017 333 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 MPGP29372 298 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 PRDX3P30048 256 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 BDKRB2P30411 391 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 UGT2B10P36537 528 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 RPL13AP40429 203 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SLC26A3P40879 764 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 MNDAP41218 407 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 HTR5AP47898 357 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 MRPL19P49406 292 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 DUSP3P51452 185 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 PDX1P52945 283 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ATP5J2P56134 94 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 LCN2P80188 198 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SSBP2P81877 361 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 REEP5Q00765 189 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 NAAAQ02083 359 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SIGLEC14Q08ET2 396 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ST3GAL1Q11201 340 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 KRT81Q14533 505 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 OR1C1Q15619 314 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 GGTA1PQ4G0N0 100 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 PAN3Q58A45 887 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF542PQ5EBM4 170 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 AARS2Q5JTZ9 985 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 BEND3Q5T5X7 828 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 GPR107Q5VW38 600 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 RNLSQ5VYX0 342 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF626Q68DY1 528 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 DMKNQ6E0U4 476 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 THOC7Q6I9Y2 204 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ADAM5Q6NVV9 412 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 DLK2Q6UY11 383 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 TMEM184AQ6ZMB5 413 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 TMPRSS11AQ6ZMR5 421 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 RBM44Q6ZP01 1051 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ASRGL1Q7L266 308 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 TRMT1LQ7Z2T5 733 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 HDDC2Q7Z4H3 204 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 BCDIN3DQ7Z5W3 292 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ANKRD37Q7Z713 158 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 MMD2Q8IY49 270 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 LGI2Q8N0V4 545 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 NPEPL1Q8NDH3 523 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ZNF680Q8NEM1 530 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CCDC26Q8TAB7 109 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 RDH11Q8TC12 318 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 TMEM18Q96B42 140 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 UPRTQ96BW1 309 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 NUS1Q96E22 293 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 TMA16Q96EY4 203 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SMIM10Q96HG1 83 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 CPB2Q96IY4 423 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 DNAJC1Q96KC8 554 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SLC38A2Q96QD8 506 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 NDNQ99608 321 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 MAP3K3Q99759 626 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SH3GL3Q99963 347 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 NPFFR1Q9GZQ6 430 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 FAM49AQ9H0Q0 323 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 SLC40A1Q9NP59 571 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 MRPL40Q9NQ50 206 aaKnown RBP3.32□□□□□ -1.88
SF3B1-205ENST00000424674 ZC4H2Q9NQZ6 224 aa3.32□□□□□ -1.88
SF3B1-205ENST00000424674 NANSQ9NR45 359 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms