RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DHRS11Q6UWP2 260 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC15A4Q8N697 577 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 IL31RAQ8NI17 732 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ESAMQ96AP7 390 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SMIM35A0A1B0GVV1 85 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 A6NCN8 305 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 MPIG6BO95866 241 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ADH1BP00325 375 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 TAL1P17542 331 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CSKP41240 450 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 MRPL19P49406 292 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 PIM3Q86V86 326 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 LFNGQ8NES3 379 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SUV39H2Q9H5I1 410 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 RHBDD3Q9Y3P4 386 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 P04436 131 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SSTR2P30874 369 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 HNRNPH3P31942 346 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GABRA2P47869 451 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CCL23P55773 120 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CHRNEQ04844 493 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF266Q14584 549 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 MPEG1Q2M385 716 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 PLAC9Q5JTB6 97 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 METTL2BQ6P1Q9 378 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CD300LGQ6UXG3 332 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ZFP41Q8N8Y5 198 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 TXNDC5Q8NBS9 432 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 OR5D16Q8NGK9 328 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 OR13C5Q8NGS8 318 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 OR13C2Q8NGS9 318 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 CPNE4Q96A23 557 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF599Q96NL3 588 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 NT5DC2Q9H857 520 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR160Q9UJ42 338 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 LCATP04180 440 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ZNF30P17039 623 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ELK1P19419 428 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ID2Q02363 134 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SLC17A1Q14916 467 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 TMEM107Q6UX40 140 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 MRPL10Q7Z7H8 261 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 METTL27Q8N6F8 245 aaPredicted RBP12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 GATSQ8NAP1 163 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 JOSD2Q8TAC2 188 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SUSD5O60279 629 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 STSP08842 583 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 ADH5P11766 374 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SHMT1P34896 483 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 KCNAB2Q13303 367 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 SPANXN4Q5MJ08 99 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 KLHDC1Q8N7A1 406 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 C10orf90Q96M02 699 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 URGCP-MRPS24S4R325 110 aa12.64□□□□□ -0.39
CCDC88A-204ENST00000413716 LOC105369274A0A096LPK9 316 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 OMGP23515 440 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 MC3RP41968 323 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 FAM214AQ32MH5 1076 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 METAP1DQ6UB28 335 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 OR4N4Q8N0Y3 316 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 LILRB4Q8NHJ6 448 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 TFGQ92734 400 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 RAB8BQ92930 207 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 DNAJA3Q96EY1 480 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 KCNMB3Q9NPA1 279 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 ADAM29Q9UKF5 820 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 COQ4Q9Y3A0 265 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 RNF11Q9Y3C5 154 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 AK1P00568 194 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 GPR176Q14439 515 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PRSS55Q6UWB4 352 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 OR2M2Q96R28 347 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PLAGL1Q9UM63 463 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PCDHGA9Q9Y5G4 932 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 CNTNAP4Q9C0A0 1308 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 SMIM17P0DL12 118 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 BMP4P12644 408 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 CA5AP35218 305 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 IQGAP1P46940 1657 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PTPRCAPQ14761 206 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PXT1Q8NFP0 134 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 BPIFCQ8NFQ6 507 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 OR52P1PQ8NH57 321 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 LMX1AQ8TE12 382 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 ZCCHC4Q9H5U6 513 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 ROBO2Q9HCK4 1378 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 ALDOAP04075 364 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 CD79AP11912 226 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 GGT1P19440 569 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 SERPINA2P20848 420 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 CAMK2BQ13554 666 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PLBD1Q6P4A8 553 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 SPATA31E1Q6ZUB1 1445 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 TACR3P29371 465 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 SOX3P41225 446 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 RBMS2Q15434 407 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 BRIX1Q8TDN6 353 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 RNF141Q8WVD5 230 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 DEFB126Q9BYW3 111 aa12.63□□□□□ -0.39
CCDC88A-204ENST00000413716 PDE7BQ9NP56 450 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms