RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SDF2Q99470 211 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 SDHCQ99643 169 aaPredicted RBP12.46□□□□□ -0.41
VPS54-203ENST00000409558 PINK1Q9BXM7 581 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 ZNF106Q9H2Y7 1883 aaKnown RBP12.46□□□□□ -0.42
VPS54-203ENST00000409558 DAPL1A0PJW8 107 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 PRODHO43272 600 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 PLOD3O60568 738 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 GSTT2P0CG29 244 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 GSTT2BP0CG30 244 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 SLC2A2P11168 524 aaPredicted RBP12.46□□□□□ -0.42
VPS54-203ENST00000409558 SLC1A3P43003 542 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 DDI2Q5TDH0 399 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 PRR22Q8IZ63 422 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 FAM98AQ8NCA5 519 aaKnown RBP12.46□□□□□ -0.42
VPS54-203ENST00000409558 SDR9C7Q8NEX9 313 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 OR52R1Q8NGF1 315 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 OR6K6Q8NGW6 343 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 GNPDA2Q8TDQ7 276 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 KIR3DX1Q9H7L2 352 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 CES1P1Q9UKY3 287 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 ANKRD61A6NGH8 418 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 SMLR1H3BR10 107 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 PLRG1O43660 514 aaKnown RBP12.46□□□□□ -0.42
VPS54-203ENST00000409558 TSC22D2O75157 780 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 LIMS3P0CW19 117 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 LIMS4P0CW20 117 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 TBXA2RP21731 343 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 BTG2P78543 158 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 GNA13Q14344 377 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 ZIC1Q15915 447 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 MINDY4Q4G0A6 757 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 DCST2Q5T1A1 773 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 C1orf94Q6P1W5 598 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 LRRC17Q8N6Y2 441 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 OR52L1Q8NGH7 329 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 ENKURQ8TC29 256 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 OR2A14Q96R47 310 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 LMF1Q96S06 567 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 TEX12Q9BXU0 123 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 POLDIP3Q9BY77 421 aaKnown RBP12.46□□□□□ -0.42
VPS54-203ENST00000409558 DAPP1Q9UN19 280 aa12.46□□□□□ -0.42
VPS54-203ENST00000409558 ST6GAL1P15907 406 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 TEAD1P28347 426 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 UGT2B10P36537 528 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 CRYZQ08257 329 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 OR1Q1Q15612 314 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 TRIQKQ629K1 86 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 ZNF517Q6ZMY9 492 aaPredicted RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 SHISA6Q6ZSJ9 500 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 ZNF681Q96N22 645 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 RAB11FIP5Q9BXF6 653 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 CPNE7Q9UBL6 633 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 GSTK1Q9Y2Q3 226 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 FAM186AA6NE01 2351 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 SHISA3A0PJX4 238 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 SAGE2PA6NJ88 616 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 C4orf47A7E2U8 309 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 C17orf51A8MQB3 221 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 E9PI62 339 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 PYCR1P32322 319 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 RPS27P42677 84 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 OR10A3P58181 314 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 SNRPGP62308 76 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 RACK1P63244 317 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 ZNF181Q2M3W8 571 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 FAAH2Q6GMR7 532 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 OOSP2Q86WS3 158 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 IZUMO1Q8IYV9 350 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 C19orf18Q8NEA5 215 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 OR2T33Q8NG76 320 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 RBM18Q96H35 190 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 FYTTD1Q96QD9 318 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 UBQLN3Q9H347 655 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 OR6C2Q9NZP2 312 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 NLKQ9UBE8 527 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 DSPPQ9NZW4 1301 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 SLC9B1P1A6NJY1 282 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 MAOAP21397 527 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 TNFRSF17Q02223 184 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 KLHL22Q53GT1 634 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 CNIH2Q6PI25 160 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 ESPNLQ6ZVH7 1005 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 PAQR7Q86WK9 346 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 DIO2Q92813 273 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 EFHD2Q96C19 240 aaPredicted RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 SPACA7Q96KW9 195 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 ZFP3Q96NJ6 502 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 GAL3ST1Q99999 423 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 ZFYVE21Q9BQ24 234 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 KATNB1Q9BVA0 655 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 MRPL15Q9P015 296 aaKnown RBP12.45□□□□□ -0.42
VPS54-203ENST00000409558 KCNE5Q9UJ90 142 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 TBC1D24Q9ULP9 559 aa12.45□□□□□ -0.42
VPS54-203ENST00000409558 MAP1BP46821 2468 aaKnown RBP12.44□□□□□ -0.42
VPS54-203ENST00000409558 MSL3P1P0C860 447 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 CASP3P42574 277 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 RHAGQ02094 409 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 ZNF79Q15937 498 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 AMZ1Q400G9 498 aa12.44□□□□□ -0.42
VPS54-203ENST00000409558 MRM1Q6IN84 353 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms