RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MROH7-TTC4A0A0A0MT08 1334 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PCF11O94913 1555 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM210A6NLX4 147 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 C15orf62A8K5M9 175 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 H3BMH7 237 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 H3BQV1 296 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OR7A17O14581 309 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SH2D1BO14796 132 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 RAD51BO15315 384 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 RBBP9O75884 186 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 APOHP02749 345 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MT-ND2P03891 347 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SLC35G4P0C7Q5 338 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 NAGAP17050 411 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 GNLYP22749 145 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 GLRA1P23415 457 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MMP11P24347 488 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PPP2R1BP30154 601 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MMP12P39900 470 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 KCNJ3P48549 501 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 NOVA1P51513 510 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SGSHP51688 502 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 LINC00205P59089 165 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PSMC5P62195 406 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CSNK1G2P78368 415 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MRPS6P82932 125 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 LGALS3BPQ08380 585 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ITGA9Q13797 1035 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CTTNQ14247 550 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OPCMLQ14982 345 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CHI3L2Q15782 390 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 KNOP1Q1ED39 458 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 EARS2Q5JPH6 523 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PAGE2BQ5JRK9 111 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PIK3CD-AS1Q5SR53 167 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 THEM4Q5T1C6 240 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 C6orf183Q5T699 404 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 NADSYN1Q6IA69 706 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OR52W1Q6IF63 320 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 FAM122CQ6P4D5 195 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ASCL4Q6XD76 172 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM184AQ6ZMB5 413 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 NELFCDQ8IXH7 590 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CLEC4FQ8N1N0 589 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM104Q8NE00 496 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OR13C5Q8NGS8 318 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CD99L2Q8TCZ2 262 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TCP11Q8WWU5 503 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SLC35C1Q96A29 364 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MYLPFQ96A32 169 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF274Q96GC6 653 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ZFYVE19Q96K21 471 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 DUSP16Q9BY84 665 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 GPN2Q9H9Y4 310 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 POLD4Q9HCU8 107 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 NT5MQ9NPB1 228 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 C8orf4Q9NR00 106 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 C2orf42Q9NWW7 574 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 LYARQ9NX58 379 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 FZR1Q9UM11 496 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PRPF19Q9UMS4 504 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PAM16Q9Y3D7 125 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MAP3K4Q9Y6R4 1608 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 KDM5BQ9UGL1 1544 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 NEURL4Q96JN8 1562 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 SNED1Q8TER0 1413 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 A0A1W2PPV9 198 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 LRP5LA4QPB2 252 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 GOLGA8JA6NMD2 632 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 FPGTO14772 594 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 HAT1O14929 419 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 BUD23O43709 281 aaKnown RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 RFPL2O75678 378 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 B3GAT3O94766 335 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 LCA5LO95447 670 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 CLDN9O95484 217 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 PIGRP01833 764 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 IGF1P05019 195 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 GOLGA8HP0CJ92 632 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 HSMCR30P0CW71 290 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 ANXA3P12429 323 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 GP1BBP13224 206 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 HPCAL1P37235 193 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 MAGEA5P43359 124 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 ATP5J2P56134 94 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 EEF1A1P68104 462 aaKnown RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 OGDHQ02218 1023 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 SIGLEC14Q08ET2 396 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 FADDQ13158 208 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 PIGHQ14442 188 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 FASTKD3Q14CZ7 662 aaKnown RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 DUOXA1Q1HG43 343 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 C18orf21Q32NC0 220 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 GLYR1Q49A26 553 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 TTMPQ5BVD1 217 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF658Q5TYW1 1059 aaPredicted RBP3.63□□□□□ -1.83
HMGB1-204ENST00000399489 EEF1A1P5Q5VTE0 462 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 PLPP4Q5VZY2 271 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF470Q6ECI4 717 aa3.63□□□□□ -1.83
HMGB1-204ENST00000399489 H3F3CQ6NXT2 135 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms