RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PINX1Q96BK5 328 aaKnown RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 MUCL1Q96DR8 90 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 IMP4Q96G21 291 aaKnown RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 MGAT4CQ9UBM8 478 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 A0A1W2PP18 115 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 GOSR2O14653 212 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 IMPA2O14732 288 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 CDC14BO60729 498 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 TNFAIP8L3Q5GJ75 292 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 EXOSC6Q5RKV6 272 aaKnown RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 ST7LQ8TDW4 575 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 BORCS5Q969J3 196 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 PIGTQ969N2 578 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 TAMM41Q96BW9 452 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF681Q96N22 645 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 MROH6A6NGR9 719 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 GSTP1P09211 210 aaKnown RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 TIA1P31483 386 aaKnown RBP eCLIP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 CLCN2P51788 898 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 HSD11B2P80365 405 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 SLC39A11Q8N1S5 342 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 GLB1L3Q8NCI6 653 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 OR7G3Q8NG95 312 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 KLF16Q9BXK1 252 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 CRLF2Q9HC73 371 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 Q9Y3F1 56 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 NCS1P62166 190 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 ASTLQ6HA08 431 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-202ENST00000357409 SLC16A14Q7RTX9 510 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 OR5L2Q8NGL0 311 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 DENND1AQ8TEH3 1009 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 SLAMF9Q96A28 289 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 ROPN1LQ96C74 230 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 OR7D2Q96RA2 312 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 TRIM36Q9NQ86 728 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 COPZ2Q9P299 210 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 SLC6A5Q9Y345 797 aa6.91□□□□□ -1.3
VPS13A-202ENST00000357409 CLN5O75503 358 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 NTN1O95631 604 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 MT-ND5P03915 603 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OPN1MWP04001 364 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OPN1MW2P0DN77 364 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OPN1MW3P0DN78 364 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 HLA-DMAP28067 261 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 REEP3Q6NUK4 255 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 MMP21Q8N119 569 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 WBP2Q969T9 261 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 TUBG2Q9NRH3 451 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 CDC42BPBQ9Y5S2 1711 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OR7C1O76099 320 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF205O95201 554 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 HMGN1P05114 100 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 DPP6P42658 865 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 EMX2Q04743 252 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ENTPD8Q5MY95 495 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 RTN4RL1Q86UN2 441 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 STK35Q8TDR2 534 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 FBXW5Q969U6 566 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 MSANTD3Q96H12 275 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 HSD3B7Q9H2F3 369 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ZDHHC7Q9NXF8 308 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 PUS1Q9Y606 427 aaKnown RBP eCLIP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 C12orf71A8MTZ7 269 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 H7C417 338 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 SPDEFO95238 335 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OR8U9P0C7N5 309 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 POLR2HP52434 150 aaKnown RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 NKX3-2P78367 333 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 POU3F1Q03052 451 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OR1J4Q8NGS1 313 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 OR5AK2Q8NH90 309 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 DZANK1Q9NVP4 752 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 A0A1W2PQ09 198 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 M0R1B8 84 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 B4GALT3O60512 393 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 GPR37L1O60883 481 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 RRASP10301 218 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 PTGER4P35408 488 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 EIF2DP41214 584 aaKnown RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 FRKP42685 505 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 EPHA5P54756 1037 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 DPYSQ14117 519 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 KDELC1Q6UW63 502 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ARL14Q8N4G2 192 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 FIBINQ8TAL6 211 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 HOXB13Q92826 284 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 BSCL2Q96G97 398 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 C4orf36Q96KX1 117 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 SETBP1Q9Y6X0 1596 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 HHLA1C9JL84 531 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 GSTM2P28161 218 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 CSNK1A1P48729 337 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 PMP22Q01453 160 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ESPNLQ6ZVH7 1005 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 PIWIL3Q7Z3Z3 882 aaKnown RBP6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ISL2Q96A47 359 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 NTNG1Q9Y2I2 539 aa6.9□□□□□ -1.3
VPS13A-202ENST00000357409 ZNF816-ZNF321PA0A0X1KG74 233 aa6.9□□□□□ -1.31
VPS13A-202ENST00000357409 GUSBP08236 651 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms