RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 COX4I2Q96KJ9 171 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 NIPAL2Q9H841 368 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TOR4AQ9NXH8 423 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SIDT1Q9NXL6 827 aaKnown RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF225Q9UK10 706 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 N6AMT1Q9Y5N5 214 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 NINQ8N4C6 2090 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF462Q96JM2 2506 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 UNC119BA6NIH7 251 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CCRL2O00421 344 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 EIF1BO60739 113 aaKnown RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TRAPPC6AO75865 159 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 IGLV3-19P01714 112 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ERCC1P07992 297 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CD36P16671 472 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZNF43P17038 809 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ZP2Q05996 745 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SCN1BQ07699 218 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SPRED3Q2MJR0 410 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SFT2D3Q587I9 215 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 LAIR1Q6GTX8 287 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 DHRS4L2Q6PKH6 230 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 TMEM178AQ8NBL3 297 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 OR10Q1Q8NGQ4 319 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ATOH1Q92858 354 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 BPIFA2Q96DR5 249 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CENPMQ9NSP4 180 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 SLAMF8Q9P0V8 285 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 LDB3O75112 727 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 IFI6P09912 130 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CD46P15529 392 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 FUT1P19526 365 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CELP19835 753 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PYCR1P32322 319 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ILKQ13418 452 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 MICAQ29983 383 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PMS2CLQ68D20 193 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 VN1R4Q7Z5H5 301 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 OR52R1Q8NGF1 315 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 OR7D2Q96RA2 312 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 ULBP3Q9BZM4 244 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 A4GALTQ9NPC4 353 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 PRDM7Q9NQW5 492 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 MAU2Q9Y6X3 613 aa6.41□□□□□ -1.38
SF3B1-201ENST00000335508 USP9XQ93008 2570 aaPredicted RBP6.41□□□□□ -1.38
SF3B1-201ENST00000335508 CLCA1A8K7I4 914 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 GNB5O14775 395 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 NARSO43776 548 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 CYC1P08574 325 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 CFL1P23528 166 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 NUDT6P53370 316 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 LIM2P55344 173 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 ACTA2P62736 377 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 ACTG2P63267 376 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 PLK5Q496M5 336 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 RSBN1Q5VWQ0 802 aaPredicted RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 RHBDD2Q6NTF9 364 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 XKR5Q6UX68 686 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 NSMAFQ92636 917 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 RNF31Q96EP0 1072 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SLC29A1Q99808 456 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 MACROD1Q9BQ69 325 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SORBS1Q9BX66 1292 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 TRIM8Q9BZR9 551 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 CHRNA10Q9GZZ6 450 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 PAIP2BQ9ULR5 123 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 METTL21EPA6NDL7 271 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 PLD2O14939 933 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SOX14O95416 240 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 CD53P19397 219 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SLC26A5P58743 744 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 VLDLRP98155 873 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 GLO1Q04760 184 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 KCTD8Q6ZWB6 473 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 PRSS48Q7RTY5 328 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SNIP1Q8TAD8 396 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SLC41A3Q96GZ6 507 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 MCTS1Q9ULC4 181 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 PSME4Q14997 1843 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 MTORP42345 2549 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 FGF17O60258 216 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 NOVA1P51513 510 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 NUBP1P53384 320 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 IST1P53990 364 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 GFERP55789 205 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 AP3S2P59780 193 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 MRPL49Q13405 166 aaKnown RBP6.4□□□□□ -1.38
SF3B1-201ENST00000335508 SLC22A10Q63ZE4 541 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 RASSF6Q6ZTQ3 369 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 ACOT13Q9NPJ3 140 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 TMPRSS11EQ9UL52 423 aa6.4□□□□□ -1.38
SF3B1-201ENST00000335508 KIF13BQ9NQT8 1826 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF701M0R085 212 aaPredicted RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 M0R3H8 397 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 WISP3O95389 354 aaPredicted RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 STT3AP46977 705 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 TEKQ02763 1124 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 MLC1Q15049 377 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 RAET1LQ5VY80 246 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 C18orf63Q68DL7 685 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms