RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PLBD1Q6P4A8 553 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 Q6ZVL8 140 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 RASGRP3Q8IV61 690 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 SAMD14Q8IZD0 417 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF607Q96SK3 696 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 ALG8Q9BVK2 526 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 FAIM2Q9BWQ8 316 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 HCAR1Q9BXC0 346 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 BTBD1Q9H0C5 482 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 EVA1AQ9H8M9 152 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 BABAM2Q9NXR7 383 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 B4GALT6Q9UBX8 382 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 REV3LO60673 3130 aa12.56□□□□□ -0.4
CCDC88C-201ENST00000331194 PRSS44E7EML9 344 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SURF4O15260 269 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 PIP5K1CO60331 668 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 FGF2P09038 288 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 UCHL1P09936 223 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SPINT3P49223 89 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SLC16A1P53985 500 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SMIM11AP58511 58 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 KLF9Q13886 244 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 HIST2H2AA3Q6FI13 130 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 CD300LDQ6UXZ3 194 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 NKAIN4Q8IVV8 208 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 OR56A3Q8NH54 315 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 OR5W2Q8NH69 310 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 MRPS24Q96EL2 167 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 CCDC86Q9H6F5 360 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 ZDHHC6Q9H6R6 413 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 CWH43Q9H720 699 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SIRT3Q9NTG7 399 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 PRR23D1E9PI22 279 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 INPPL1O15357 1258 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SUSD5O60279 629 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 PRKRAO75569 313 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SLCO2B1O94956 709 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 EGFP01133 1207 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 GLAP06280 429 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 PRR23D2P0DMB1 279 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 RAB3AP20336 220 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SERPINA4P29622 427 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 TM4SF4P48230 202 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 CCR8P51685 355 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SMAD3P84022 425 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 C2orf68Q2NKX9 166 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SEZ6L2Q6UXD5 910 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 OR10H4Q8NGA5 316 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 OR1S1Q8NH92 325 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 TMEM159Q96B96 161 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 ARL6Q9H0F7 186 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 CREBZFQ9NS37 354 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SEMA4GQ9NTN9 838 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 COPZ2Q9P299 210 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 KLK11Q9UBX7 282 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 PGRMC2O15173 223 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 RNGTTO60942 597 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 ADAMTS4O75173 837 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 NFATC1O95644 943 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 UGT2B7P16662 529 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 TAS2R41P59536 307 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 POM121L1PQ3SYA9 428 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 FCRLBQ6BAA4 426 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 CLRN3Q8NCR9 226 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 ABHD4Q8TB40 342 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 AUTS2Q8WXX7 1259 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 IL17FQ96PD4 163 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 F2RL3Q96RI0 385 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 DPYSL5Q9BPU6 564 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 ENKD1Q9H0I2 346 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF768Q9H5H4 540 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 KLHL42Q9P2K6 505 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 DPP7Q9UHL4 492 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 PRELID3BQ9Y3B1 194 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 KCNE3Q9Y6H6 103 aa12.55□□□□□ -0.4
CCDC88C-201ENST00000331194 SPTBP11277 2137 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 IRGMA1A4Y4 181 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 GLOD5A6NK44 160 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 SPDEFO95238 335 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 IGHA1P01876 353 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 RB1P06400 928 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 CD70P32970 193 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 PSMA6P60900 246 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 SCRN3Q0VDG4 424 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 SPOUT1Q5T280 376 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 AMER3Q8N944 861 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 LRRC46Q96FV0 321 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 IL20Q9NYY1 176 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 H2AFY2Q9P0M6 372 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 PLAGL1Q9UM63 463 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 AK6Q9Y3D8 172 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 SYNDIG1LA6NDD5 238 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 J3QLW9 94 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 STATHP02808 62 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 CHRM4P08173 479 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 ZNF19P17023 458 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 TRHRP34981 398 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 FNTBP49356 437 aa12.54□□□□□ -0.4
CCDC88C-201ENST00000331194 MMP15P51511 669 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms