RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PDCD2Q16342 344 aaPredicted RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 PLPPR5Q32ZL2 321 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 CDC73Q6P1J9 531 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 WDR75Q8IWA0 830 aaKnown RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 CHDHQ8NE62 594 aaPredicted RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 OR56A1Q8NGH5 318 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 OR5AK3PQ8NH89 298 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 ADAMTS15Q8TE58 950 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 RNF145Q96MT1 663 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 PRPF18Q99633 342 aaKnown RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 ACTRT3Q9BYD9 372 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 CXXC4Q9H2H0 198 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 PIGUQ9H490 435 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 TMEM185BQ9H7F4 350 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 DUSP22Q9NRW4 184 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 MED17Q9NVC6 651 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 FAF1Q9UNN5 650 aaPredicted RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 EIF3LQ9Y262 564 aaKnown RBP17.55■□□□□ 0.4
LIME1-201ENST00000309546 TESMINQ9Y4I5 508 aa17.55■□□□□ 0.4
LIME1-201ENST00000309546 NPIPA5A0A0B4J1W7 369 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 NPIPA7E9PJI5 369 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 CTIFO43310 598 aaKnown RBP17.54■□□□□ 0.4
LIME1-201ENST00000309546 ITM2AO43736 263 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 NPIPA8P0DM63 369 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 G6PDP11413 515 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 POU2F1P14859 743 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 CD79BP40259 229 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 ZNF844Q08AG5 666 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 CHI3L2Q15782 390 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 LSM12Q3MHD2 195 aaKnown RBP17.54■□□□□ 0.4
LIME1-201ENST00000309546 EXOSC6Q5RKV6 272 aaKnown RBP17.54■□□□□ 0.4
LIME1-201ENST00000309546 ZNF474Q6S9Z5 364 aaPredicted RBP17.54■□□□□ 0.4
LIME1-201ENST00000309546 MISPQ8IVT2 679 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 GTPBP8Q8N3Z3 284 aaPredicted RBP17.54■□□□□ 0.4
LIME1-201ENST00000309546 NATD1Q8N6N6 113 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 B4GALNT2Q8NHY0 566 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 ZBTB8AQ96BR9 441 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 ZBTB9Q96C00 473 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 KLHDC3Q9BQ90 382 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 DUSP26Q9BV47 211 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 TMEM109Q9BVC6 243 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 KLHL28Q9NXS3 571 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 PROCRQ9UNN8 238 aa17.54■□□□□ 0.4
LIME1-201ENST00000309546 A0A1W2PQD3 144 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 ATE1O95260 518 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 PLGP00747 810 aaPredicted RBP17.53■□□□□ 0.4
LIME1-201ENST00000309546 CD99P14209 185 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 PRPS1L1P21108 318 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 SLC6A8P48029 635 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 PPP2R2AP63151 447 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 MAD2L1Q13257 205 aaPredicted RBP17.53■□□□□ 0.4
LIME1-201ENST00000309546 FGFBP1Q14512 234 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 PGS1Q32NB8 556 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 DCST2Q5T1A1 773 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 MREGQ8N565 214 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 ZNF614Q8N883 585 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 OR10D3Q8NH80 312 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 PHOSPHO1Q8TCT1 267 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 ACTRT2Q8TDY3 377 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 COQ8BQ96D53 544 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 ALPK1Q96QP1 1244 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 SLC39A3Q9BRY0 314 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 MED18Q9BUE0 208 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 BHLHE41Q9C0J9 482 aaPredicted RBP17.53■□□□□ 0.4
LIME1-201ENST00000309546 CENPHQ9H3R5 247 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 ZNF395Q9H8N7 513 aaPredicted RBP17.53■□□□□ 0.4
LIME1-201ENST00000309546 PLEKHF2Q9H8W4 249 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 NEUROD4Q9HD90 331 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 NOP53Q9NZM5 478 aaKnown RBP17.53■□□□□ 0.4
LIME1-201ENST00000309546 C6orf203Q9P0P8 240 aaPredicted RBP17.53■□□□□ 0.4
LIME1-201ENST00000309546 CLEC4AQ9UMR7 237 aa17.53■□□□□ 0.4
LIME1-201ENST00000309546 A0A1W2PPR1 153 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 TNFSF11O14788 317 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 CXCL13O43927 109 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 SYNGR4O95473 234 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 NUDT14O95848 222 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 SERPINE1P05121 402 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 KRT16P08779 473 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 ME2P23368 584 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 CCKARP32238 428 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 OCRLQ01968 901 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 ZNF117Q03924 483 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 EXOC3L2Q2M3D2 409 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 CAMKMTQ7Z624 323 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 TGIF2LYQ8IUE0 185 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 ZNF781Q8N8C0 355 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 ZNF610Q8N9Z0 462 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 ZNF527Q8NB42 609 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 PSMA8Q8TAA3 256 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 POC1BQ8TC44 478 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 SFXN5Q8TD22 340 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 WFIKKN1Q96NZ8 548 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 PARD6BQ9BYG5 372 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 GPATCH2Q9NW75 528 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 MCTS1Q9ULC4 181 aaKnown RBP17.52■□□□□ 0.4
LIME1-201ENST00000309546 EMC9Q9Y3B6 208 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 KCNE3Q9Y6H6 103 aa17.52■□□□□ 0.4
LIME1-201ENST00000309546 C2CD3Q4AC94 2353 aa17.51■□□□□ 0.39
LIME1-201ENST00000309546 C7orf72A4D263 438 aa17.51■□□□□ 0.39
LIME1-201ENST00000309546 DIAPH2O60879 1101 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms