RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SAP130Q9H0E3 1048 aa18.49■□□□□ 0.55
PTCD3-220ENST00000627371 THUMPD1Q9NXG2 353 aaKnown RBP18.49■□□□□ 0.55
PTCD3-220ENST00000627371 P2RX2Q9UBL9 471 aa18.49■□□□□ 0.55
PTCD3-220ENST00000627371 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.49■□□□□ 0.55
PTCD3-220ENST00000627371 MKLN1Q9UL63 735 aa18.49■□□□□ 0.55
PTCD3-220ENST00000627371 GCN1Q92616 2671 aaKnown RBP18.49■□□□□ 0.55
PTCD3-220ENST00000627371 HEATR5AQ86XA9 2040 aa18.49■□□□□ 0.55
PTCD3-220ENST00000627371 TRGV5A0A0B4J1U4 118 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 SUSD5O60279 629 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 TRAPPC6AO75865 159 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 H6PDO95479 791 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 BMP2P12643 396 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 NFYCQ13952 458 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 TOMM20Q15388 145 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 CD226Q15762 336 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 SYPL1Q16563 259 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 EIF2S3LQ2VIR3 472 aaKnown RBP18.48■□□□□ 0.55
PTCD3-220ENST00000627371 KLHL26Q53HC5 615 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 FGD2Q7Z6J4 655 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 MTERF4Q7Z6M4 381 aaKnown RBP18.48■□□□□ 0.55
PTCD3-220ENST00000627371 SPPL2CQ8IUH8 684 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 ZNF619Q8N2I2 560 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 ANKFN1Q8N957 763 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 GATSQ8NAP1 163 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 OR2M3Q8NG83 312 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 OIT3Q8WWZ8 545 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 CPPED1Q9BRF8 314 aaPredicted RBP18.48■□□□□ 0.55
PTCD3-220ENST00000627371 CCDC106Q9BWC9 280 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 OR2B2Q9GZK3 357 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 SLC6A15Q9H2J7 730 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 LDAHQ9H6V9 325 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 CORO2BQ9UQ03 480 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 ZNF835Q9Y2P0 537 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 DTNAQ9Y4J8 743 aa18.48■□□□□ 0.55
PTCD3-220ENST00000627371 AQP7O14520 342 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 SLC19A2O60779 497 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 SHOX2O60902 331 aaPredicted RBP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 UGT2B17O75795 530 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 CHRM4P08173 479 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 NR2F1P10589 423 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 SRD5A2P31213 254 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 CYLC2Q14093 348 aaPredicted RBP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 MAPK11Q15759 364 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 ZNF141Q15928 474 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 ZNF800Q2TB10 664 aaPredicted RBP eCLIP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 TRMT5Q32P41 509 aaKnown RBP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 MMEL1Q495T6 779 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 RUNDC3AQ59EK9 446 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 REP15Q6BDI9 236 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 Q6ZPB1 254 aaPredicted RBP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 LRRC74BQ6ZQY2 392 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 FAM83FQ8NEG4 500 aaPredicted RBP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 PRR7Q8TB68 274 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 ANKRD27Q96NW4 1050 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 CGREF1Q99674 301 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 MYLK2Q9H1R3 596 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 SLC38A1Q9H2H9 487 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 DSN1Q9H410 356 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 IKZF5Q9H5V7 419 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 MED11Q9P086 117 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 KCNE5Q9UJ90 142 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 ADAM21Q9UKJ8 722 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 OSGIN2Q9Y236 505 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 MRPS18CQ9Y3D5 142 aaKnown RBP18.47■□□□□ 0.55
PTCD3-220ENST00000627371 MED12Q93074 2177 aa18.47■□□□□ 0.55
PTCD3-220ENST00000627371 LOC100653049A0A140TA62 436 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 OR14I1A6ND48 311 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 EVPLLA8MZ36 301 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 H3BNH8 94 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 TNFRSF21O75509 655 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 KRT34O76011 436 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 STSP08842 583 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 TFPTP0C1Z6 253 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 ABOP16442 354 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 GPX2P18283 190 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 ENDOUP21128 410 aaKnown RBP18.46■□□□□ 0.55
PTCD3-220ENST00000627371 PTGS2P35354 604 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 DSCR4P56555 118 aaPredicted RBP18.46■□□□□ 0.55
PTCD3-220ENST00000627371 CHRNEQ04844 493 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 GANABQ14697 944 aaKnown RBP18.46■□□□□ 0.55
PTCD3-220ENST00000627371 EIPR1Q53HC9 387 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 PDZK1Q5T2W1 519 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 ZNF614Q8N883 585 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 RP9Q8TA86 221 aaKnown RBP18.46■□□□□ 0.55
PTCD3-220ENST00000627371 NEIL3Q8TAT5 605 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 SLC38A5Q8WUX1 472 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 CCT8L2Q96SF2 557 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 RUBCNLQ9H714 662 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 EXO5Q9H790 373 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 PTGES2Q9H7Z7 377 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 CALML5Q9NZT1 146 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 DKKL1Q9UK85 242 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 ARL2BPQ9Y2Y0 163 aa18.46■□□□□ 0.55
PTCD3-220ENST00000627371 FLNCQ14315 2725 aa18.45■□□□□ 0.54
PTCD3-220ENST00000627371 TENM4Q6N022 2769 aa18.45■□□□□ 0.54
PTCD3-220ENST00000627371 CENPVL1A0A0U1RR11 272 aa18.45■□□□□ 0.54
PTCD3-220ENST00000627371 TMEM247A6NEH6 219 aa18.45■□□□□ 0.54
PTCD3-220ENST00000627371 MRASO14807 208 aa18.45■□□□□ 0.54
PTCD3-220ENST00000627371 ZNHIT1O43257 154 aa18.45■□□□□ 0.54
PTCD3-220ENST00000627371 BCHEP06276 602 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms