RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DBTP11182 482 aaKnown RBP14.6□□□□□ -0.07
CPSF1-213ENST00000620219 ELAVL4P26378 380 aaKnown RBP14.6□□□□□ -0.07
CPSF1-213ENST00000620219 MAGEA2P43356 314 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 ST3GAL4Q11206 333 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 TPK1Q9H3S4 243 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 APMAPQ9HDC9 416 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 PRDM9Q9NQV7 894 aa14.6□□□□□ -0.07
CPSF1-213ENST00000620219 ADAP00813 363 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 MAD2L1BPQ15013 274 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 SHFQ7M4L6 423 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 C10orf90Q96M02 699 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 TAS2R16Q9NYV7 291 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 C19orf25Q9UFG5 118 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 CES1P1Q9UKY3 287 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 CKMT1AP12532 417 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 GSTM3P21266 225 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 EPHA4P54764 986 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 OR1Q1Q15612 314 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 SLC27A4Q6P1M0 643 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 ZNF836Q6ZNA1 936 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 TSPYL5Q86VY4 417 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 ZNF681Q96N22 645 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 MARCH7Q9H992 704 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 CSNK1G3Q9Y6M4 447 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 ZNF99A8MXY4 864 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 EFCAB9A8MZ26 197 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 CYR61O00622 381 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 PRG2P13727 222 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 HOXB9P17482 250 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 PAPD4Q6PIY7 484 aaKnown RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 ZNF550Q7Z398 422 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 GALNT15Q8N3T1 639 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 TM4SF19Q96DZ7 209 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 CHCHD6Q9BRQ6 235 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 ZNF639Q9UID6 485 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 RNF6Q9Y252 685 aa14.59□□□□□ -0.07
CPSF1-213ENST00000620219 GPR55Q9Y2T6 319 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 GPC6Q9Y625 555 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-213ENST00000620219 KCNK2O95069 426 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 LGI1O95970 557 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 OPN1LWP04000 364 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 OSMP13725 252 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 CHMP24386 653 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 CLDN6P56747 220 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 IGFN1Q86VF2 1251 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 IL22RA1Q8N6P7 574 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 OR6K6Q8NGW6 343 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 TMEM255BQ8WV15 326 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 LRR1Q96L50 414 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 SAMD8Q96LT4 415 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 BDP1A6H8Y1 2624 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 SPEGQ15772 3267 aa14.58□□□□□ -0.07
CPSF1-213ENST00000620219 RIIAD1A6NNX1 92 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 TBX19O60806 448 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 CSF2RBP32927 897 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 DGAT2L6Q6ZPD8 337 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 GNPDA2Q8TDQ7 276 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 HSPBAP1Q96EW2 488 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 SEMA4GQ9NTN9 838 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 SVILO95425 2214 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 TTKP33981 857 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 RPS6KA3P51812 740 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 ROR2Q01974 943 aaKnown RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 DYNC1I2Q13409 638 aaKnown RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 SF3A2Q15428 464 aaKnown RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 C16orf47Q6ZP98 133 aaPredicted RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 ORAI3Q9BRQ5 295 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 LAMA1P25391 3075 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 TRBV11-1A0A0K0K1C0 115 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 CYB561A3Q8NBI2 242 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 FANK1Q8TC84 345 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 C6orf62Q9GZU0 229 aaPredicted RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 NXF5Q9H1B4 397 aaKnown RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 DUSP22Q9NRW4 184 aa14.58□□□□□ -0.08
CPSF1-213ENST00000620219 ZNF106Q9H2Y7 1883 aaKnown RBP14.58□□□□□ -0.08
CPSF1-213ENST00000620219 PRAMEF25A6NGN4 478 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 C11orf98E9PRG8 122 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 H0YIG0 161 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 PLOD3O60568 738 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 STT3AP46977 705 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 VBP1P61758 197 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 MADCAM1Q13477 382 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 SLC2A12Q8TD20 617 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 PILRBQ9UKJ0 227 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 VDAC3Q9Y277 283 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 FANCMQ8IYD8 2048 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 TECTAO75443 2155 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 PLD2O14939 933 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 ITIH1P19827 911 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 RPS3AP61247 264 aaKnown RBP14.57□□□□□ -0.08
CPSF1-213ENST00000620219 SPEM2Q0P670 501 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 IL18R1Q13478 541 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 SEC23BQ15437 767 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 PWWP2BQ6NUJ5 590 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 OR10H4Q8NGA5 316 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 OR4D11Q8NGI4 311 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 OR51L1Q8NGJ5 315 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 TMEM239Q8WW34 195 aa14.57□□□□□ -0.08
CPSF1-213ENST00000620219 ANKRD9Q96BM1 317 aaPredicted RBP14.57□□□□□ -0.08
CPSF1-213ENST00000620219 TRIM2Q9C040 744 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms