RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CDH10Q9Y6N8 788 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TDRD15B5MCY1 1934 aaKnown RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 GREB1Q4ZG55 1949 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3DA0A087WVF3 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3IA0A087WXS9 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3EA0A087X179 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3KA0A087X1G2 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 A0A0A6YYJ9 748 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 A0A0B4J203 849 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3FA6NER0 549 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 A8MVJ9 347 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3LB9A6J9 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 ERVH48-1M5A8F1 160 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 MAGEB4O15481 346 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 RNF13O43567 381 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 FZD7O75084 574 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 SLC35G6P0C7Q6 338 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3HP0C7X1 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DRD2P14416 443 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 CAMK2BQ13554 666 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3GQ6DHY5 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3CQ6IPX1 549 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 RTL4Q6ZR62 310 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 LAS2Q8IYD9 372 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TBC1D3Q8IZP1 549 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 AMER3Q8N944 861 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 GALNT11Q8NCW6 608 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 OR14C36Q8NHC7 312 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 GOT1L1Q8NHS2 421 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 ELMOD3Q96FG2 381 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 PINK1Q9BXM7 581 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 METTL17Q9H7H0 456 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 HINT3Q9NQE9 182 aaKnown RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 TAS2R10Q9NYW0 307 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 RALGAPA2Q2PPJ7 1873 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 MYOFQ9NZM1 2061 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TRBV2A0A0J9YWF9 115 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 A0A1B0GW55 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 AGAP14A8MT82 685 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 FAM171A2A8MVW0 826 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 ALDOBP05062 364 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 MSL3P1P0C860 447 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4L2P0CJ85 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4L3P0CJ86 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4L4P0CJ87 422 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4L5P0CJ88 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4L6P0CJ89 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4L7P0CJ90 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 LIMS3P0CW19 117 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 LIMS4P0CW20 117 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 FUT1P19526 365 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 CST5P28325 142 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 VIPR2P41587 438 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 SIGIRRQ6IA17 410 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 FAM83HQ6ZRV2 1179 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 FAM220AQ7Z4H9 259 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TMEM150AQ86TG1 271 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 KIAA1143Q96AT1 154 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 ZG16BQ96DA0 208 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TAPBPLQ9BX59 468 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 SLC25A18Q9H1K4 315 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TCF7L1Q9HCS4 588 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 ACOXLQ9NUZ1 547 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DUX4Q9UBX2 424 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 ATG4BQ9Y4P1 393 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 SPTBP11277 2137 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 CENPFP49454 3210 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TRAV27A0A087WT01 109 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 HYAL3O43820 417 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 PPP1R3DO95685 299 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 MMP12P39900 470 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 PSMB10P40306 273 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 DEFB103AP81534 67 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 OC90Q02509 493 aaPredicted RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 HYAL4Q2M3T9 481 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 SMUG1Q53HV7 270 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 ZC3H14Q6PJT7 736 aaKnown RBP11.8□□□□□ -0.52
LIG1-221ENST00000613670 UBE2Q1Q7Z7E8 422 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 SIAH3Q8IW03 269 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 VN1R2Q8NFZ6 395 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 TTLQ8NG68 377 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 GIMAP1Q8WWP7 306 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 CDS1Q92903 461 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 RIT1Q92963 219 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 CHST2Q9Y4C5 530 aa11.8□□□□□ -0.52
LIG1-221ENST00000613670 FAM25EA8MYX2 175 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 KIAA0355O15063 1070 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 FCMRO60667 390 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 TCRBP04435 133 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ADRB3P13945 408 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CFL1P23528 166 aaKnown RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 HSD17B2P37059 387 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 DHCR24Q15392 516 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 SFXN4Q6P4A7 337 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 METAP1DQ6UB28 335 aaPredicted RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 KIF18BQ86Y91 864 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 NXPE2Q96DL1 559 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 PDCD10Q9BUL8 212 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CHST8Q9H2A9 424 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 NT5DC2Q9H857 520 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms