RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 UTS2O95399 124 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ESRRBO95718 433 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 IFNA2P01563 188 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 JUNP05412 331 aaKnown RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 NGFRP08138 427 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 IFI6P09912 130 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 FAM157CP0CG43 387 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ZNF17P17021 662 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 DDCP20711 480 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 EDNRAP25101 427 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 SHC1P29353 583 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 AGTR1P30556 359 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 TIA1P31483 386 aaKnown RBP eCLIP5.43□□□□□ -1.54
VRK3-220ENST00000600259 GABRA3P34903 492 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ARL1P40616 181 aaPredicted RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 MANFP55145 182 aaKnown RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 CTBP2P56545 445 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 C2orf54Q08AI8 447 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 C2orf80Q0P641 193 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 HEPACAMQ14CZ8 416 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 DECR1Q16698 335 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 PLPPR5Q32ZL2 321 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 GRAMD1BQ3KR37 738 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 CHRFAM7AQ494W8 412 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 EXOSC6Q5RKV6 272 aaKnown RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 SH2D4BQ5SQS7 431 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ZNF678Q5SXM1 525 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 FIGNL1Q6PIW4 674 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 TFAP2EQ6VUC0 442 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ESPNLQ6ZVH7 1005 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 EXOC3L1Q86VI1 746 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 RELL1Q8IUW5 271 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 WDR75Q8IWA0 830 aaKnown RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 FAM9CQ8IZT9 166 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 CDYL2Q8N8U2 506 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 STEAP2Q8NFT2 490 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 OR2V1Q8NHB1 315 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ACTRT2Q8TDY3 377 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ROBO4Q8WZ75 1007 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 HSD17B8Q92506 261 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 FBXW5Q969U6 566 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ZBED6CLQ96FA7 236 aaPredicted RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 AMDHD1Q96NU7 426 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 BBS4Q96RK4 519 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 ZNF382Q96SR6 550 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 HDHD5Q9BXW7 423 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 SHCBP1LQ9BZQ2 653 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 MRPL46Q9H2W6 279 aaKnown RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 PFDN4Q9NQP4 134 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 MED17Q9NVC6 651 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 PAQR5Q9NXK6 330 aaPredicted RBP5.43□□□□□ -1.54
VRK3-220ENST00000600259 NINJ2Q9NZG7 142 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 NTMQ9P121 344 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 VDAC3Q9Y277 283 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 RNF115Q9Y4L5 304 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 FREM1Q5H8C1 2179 aa5.43□□□□□ -1.54
VRK3-220ENST00000600259 PLCE1Q9P212 2302 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 GNG14A0A1W2PPG7 69 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ELOA3DA6NLF2 546 aaPredicted RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 TTC36A6NLP5 189 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 NPIPB8E9PQR5 432 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 UBFD1O14562 309 aaKnown RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 TNFSF11O14788 317 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 GPR37O15354 613 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 GMFGO60234 142 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 COQ9O75208 318 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 SMIM24O75264 130 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ULK1O75385 1050 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 SLITRK5O94991 958 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 OXSR1O95747 527 aaPredicted RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 KRT6AP02538 564 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 KRT6BP04259 564 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 C8BP07358 591 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 TUBBP07437 444 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 CD3EP07766 207 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ANXA4P09525 319 aaPredicted RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 LINGO3P0C6S8 592 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 THBS2P35442 1172 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 KRT6CP48668 564 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 NCBP2P52298 156 aaKnown RBP eCLIP5.42□□□□□ -1.54
VRK3-220ENST00000600259 CARD18P57730 90 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 IRX1P78414 480 aaPredicted RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 SLC18A2Q05940 514 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 LOXL1Q08397 574 aaPredicted RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 ACSM2AQ08AH3 577 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ZNF155Q12901 538 aaPredicted RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 KIAA0040Q15053 153 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 RASA2Q15283 850 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 TSNAXIP1Q2TAA8 658 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 TMEM249Q2WGJ8 235 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ELOA3BQ3SY89 546 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 GLE1Q53GS7 698 aaKnown RBP5.42□□□□□ -1.54
VRK3-220ENST00000600259 C6orf52Q5T4I8 152 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 DMRTA1Q5VZB9 504 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ACSM2BQ68CK6 577 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 HBMQ6B0K9 141 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 C11orf71Q6IPW1 123 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 TMEM107Q6UX40 140 aa5.42□□□□□ -1.54
VRK3-220ENST00000600259 ZNF551Q7Z340 670 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms