RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TIMP4Q99727 224 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 PRDM14Q9GZV8 571 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 HOXD1Q9GZZ0 328 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 HHATLQ9HCP6 504 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 SLC6A13Q9NSD5 602 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 EXD2Q9NVH0 621 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 CCDC167Q9P0B6 97 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 FAM215AQ9Y5M1 114 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 MYO7BQ6PIF6 2116 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 NR5A2O00482 541 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ZIC3O60481 467 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 STX11O75558 287 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ANP32DO95626 131 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ZCCHC18P0CG32 403 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 GABRA1P14867 456 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 TCEA1P23193 301 aaKnown RBP13.22□□□□□ -0.29
VRK3-206ENST00000594090 GCKP35557 465 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 SMSP52788 366 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ATP12AP54707 1039 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 GFRA1P56159 465 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 CD226Q15762 336 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 C1orf185Q5T7R7 199 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ATAD3BQ5T9A4 648 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 RTL6Q6ICC9 239 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 TMEM211Q6ICI0 200 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 BLOC1S3Q6QNY0 202 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 MRGPRGQ86SM5 289 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 MISPQ8IVT2 679 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 PM20D2Q8IYS1 436 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ZNF808Q8N4W9 903 aaPredicted RBP13.22□□□□□ -0.29
VRK3-206ENST00000594090 PNPT1Q8TCS8 783 aaKnown RBP13.22□□□□□ -0.29
VRK3-206ENST00000594090 XAGE5Q8WWM1 108 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 RAB8BQ92930 207 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 C1GALT1C1Q96EU7 318 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 ZNF350Q9GZX5 532 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 CCDC134Q9H6E4 229 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 PTGES2Q9H7Z7 377 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 FGFR1OP2Q9NVK5 253 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 TMEM45AQ9NWC5 275 aa13.22□□□□□ -0.29
VRK3-206ENST00000594090 HMGN4O00479 90 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 GMFGO60234 142 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 VIMP08670 466 aaKnown RBP13.21□□□□□ -0.3
VRK3-206ENST00000594090 TROVE2P10155 538 aaKnown RBP eCLIP13.21□□□□□ -0.3
VRK3-206ENST00000594090 CAPN3P20807 821 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 AGAP20933 346 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 MDH1P40925 334 aaKnown RBP13.21□□□□□ -0.3
VRK3-206ENST00000594090 GTDC1Q4AE62 458 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 KLHL26Q53HC5 615 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 COX20Q5RI15 118 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 C6orf10Q5SRN2 563 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.21□□□□□ -0.3
VRK3-206ENST00000594090 AAGABQ6PD74 315 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 XKRXQ6PP77 449 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 SLC2A7Q6PXP3 512 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 B3GNT6Q6ZMB0 384 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 OLIG3Q7RTU3 272 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 MAMDC2Q7Z304 686 aaPredicted RBP13.21□□□□□ -0.3
VRK3-206ENST00000594090 ULK2Q8IYT8 1036 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 PHOSPHO1Q8TCT1 267 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 ZFP90Q8TF47 636 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 GTF2H4Q92759 462 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 SPDL1Q96EA4 605 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 WDYHV1Q96HA8 205 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 SFXN2Q96NB2 322 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 NMUR2Q9GZQ4 415 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 ZNF385DQ9H6B1 395 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 ALKBH4Q9NXW9 302 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 PLEKHB1Q9UF11 243 aaPredicted RBP13.21□□□□□ -0.3
VRK3-206ENST00000594090 TRIM33Q9UPN9 1127 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 CAMK2AQ9UQM7 478 aa13.21□□□□□ -0.3
VRK3-206ENST00000594090 RPH3AQ9Y2J0 694 aaPredicted RBP13.21□□□□□ -0.3
VRK3-206ENST00000594090 PHF3Q92576 2039 aaKnown RBP13.21□□□□□ -0.3
VRK3-206ENST00000594090 KRT75O95678 551 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 HOXD4P09016 255 aaPredicted RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 HK1P19367 917 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 NCF2P19878 526 aaPredicted RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 CHMP24386 653 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 MSX1P28360 303 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 PTGER4P35408 488 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 ANXA11P50995 505 aaKnown RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 NUP107P57740 925 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 B3GALT5-AS1P59052 145 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 TXNL4AP83876 142 aaKnown RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 GPR68Q15743 365 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 ZNF630Q2M218 657 aaPredicted RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 AGKQ53H12 422 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 RAET1LQ5VY80 246 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 CGB2Q6NT52 195 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 ENPP6Q6UWR7 440 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 MTERF4Q7Z6M4 381 aaKnown RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 ZNF614Q8N883 585 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 ROPN1LQ96C74 230 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 AURKBQ96GD4 344 aaPredicted RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 SH3YL1Q96HL8 342 aaPredicted RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 TTYH2Q9BSA4 534 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 TMEM120AQ9BXJ8 343 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 PAIP1Q9H074 479 aaKnown RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 RABEP2Q9H5N1 569 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 SLC52A3Q9NQ40 469 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 MKLN1Q9UL63 735 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms