RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 METTL6Q8TCB7 284 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 IFT81Q8WYA0 676 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 MTBPQ96DY7 904 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 ZNF845Q96IR2 970 aaPredicted RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 C18orf12Q96KH6 178 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 EGLN2Q96KS0 407 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 NR1H4Q96RI1 486 aaPredicted RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 OPN3Q9H1Y3 402 aaPredicted RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 GLIPR2Q9H4G4 154 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 RABEP2Q9H5N1 569 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 DCLRE1BQ9H816 532 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 RNF122Q9H9V4 155 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 NMRK1Q9NWW6 199 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 TAS2R7Q9NYW3 318 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 MED11Q9P086 117 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 KLHL14Q9P2G3 628 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 BLOC1S6Q9UL45 172 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 C19orf53Q9UNZ5 99 aaPredicted RBP6.05□□□□□ -1.44
VPS53-213ENST00000572334 ARL2BPQ9Y2Y0 163 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 USH1CQ9Y6N9 552 aa6.05□□□□□ -1.44
VPS53-213ENST00000572334 HEATR1Q9H583 2144 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 EXOC1LA0A1B0GW35 172 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 GNG14A0A1W2PPG7 69 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 A0A1W2PPM1 405 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 GXYLT2A0PJZ3 443 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 SLC22A20A6NK97 555 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 NPIPB8E9PQR5 432 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 RIPK2O43353 540 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 TNFRSF21O75509 655 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 DCTN3O75935 186 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 AQP8O94778 261 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 IL33O95760 270 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 LY6G6DO95868 133 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ENO1P06733 434 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 THBDP07204 575 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ANXA4P09525 319 aaPredicted RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 FAM153BP0C7A2 387 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PEPDP12955 493 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 NID1P14543 1247 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 HK1P19367 917 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CALB2P22676 271 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PSMA4P25789 261 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 IL12BP29460 328 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 HMOX2P30519 316 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 UGT2B10P36537 528 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CPOXP36551 454 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CD79BP40259 229 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 SLC6A8P48029 635 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CPA2P48052 419 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PKNOX1P55347 436 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 NKX6-1P78426 367 aaPredicted RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 ACSM2AQ08AH3 577 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ZNF763Q0D2J5 394 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 C2orf80Q0P641 193 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 LCP2Q13094 533 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 HEPACAMQ14CZ8 416 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS53-213ENST00000572334 CTU2Q2VPK5 515 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 FAM153CQ494X1 144 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CYP27C1Q4G0S4 372 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ZNF385BQ569K4 471 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 EXOSC6Q5RKV6 272 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 SHEQ5VZ18 495 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ACSM2BQ68CK6 577 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 TMEM107Q6UX40 140 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ZNF550Q7Z398 422 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 TRIM46Q7Z4K8 759 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 MARCH3Q86UD3 253 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PRIMA1Q86XR5 153 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 CROCCP3Q8IVE0 287 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 UBQLNLQ8IYU4 475 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 FAM9CQ8IZT9 166 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 LRRC75A-AS1Q8N1F1 130 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 METTL25Q8N6Q8 603 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ZNF610Q8N9Z0 462 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 FNDC9Q8TBE3 224 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 DUSP19Q8WTR2 217 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 DNAJC9Q8WXX5 260 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ARL8AQ96BM9 186 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ELP4Q96EB1 424 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 C1GALT1C1Q96EU7 318 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 GIMAP5Q96F15 307 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PGM2Q96G03 612 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 ADGRG7Q96K78 797 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 COX4I2Q96KJ9 171 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 FCRL1Q96LA6 429 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 AMDHD1Q96NU7 426 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PIP5K1AQ99755 562 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 LMF2Q9BU23 707 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 MMADHCQ9H3L0 296 aaPredicted RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 NEUROD4Q9HD90 331 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 MYNNQ9NPC7 610 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PFDN4Q9NQP4 134 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 INTS9Q9NV88 658 aaKnown RBP6.04□□□□□ -1.44
VPS53-213ENST00000572334 KLHL28Q9NXS3 571 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 TAS2R9Q9NYW1 312 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 PPP4R1LQ9P1A2 415 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 DKKL1Q9UK85 242 aa6.04□□□□□ -1.44
VPS53-213ENST00000572334 NFU1Q9UMS0 254 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms