RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 DPTQ07507 201 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 GNA13Q14344 377 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ARHGAP19Q14CB8 494 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 AGERQ15109 404 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 METRNLQ641Q3 311 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 BHLHB9Q6PI77 547 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 RPTNQ6XPR3 784 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ZNF767PQ75MW2 155 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 OR52N1Q8NH53 320 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 CXorf40AQ8TE69 158 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 OR8D1Q8WZ84 308 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 MED30Q96HR3 178 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ARHGDIGQ99819 225 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 TEX12Q9BXU0 123 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 DPH1Q9BZG8 443 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 UBQLN3Q9H347 655 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ASB6Q9NWX5 421 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 MGAT4AQ9UM21 535 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 EXOGQ9Y2C4 368 aaKnown RBP12.32□□□□□ -0.44
CLN3-210ENST00000563874 ASB4Q9Y574 426 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 LOC105369274A0A096LPK9 316 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 CENPVL1A0A0U1RR11 272 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 IFNA8P32881 189 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ANXA11P50995 505 aaKnown RBP12.32□□□□□ -0.44
CLN3-210ENST00000563874 RPS7P62081 194 aaKnown RBP12.32□□□□□ -0.44
CLN3-210ENST00000563874 RIN1Q13671 783 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 NTRK2Q16620 822 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 PLA1AQ53H76 456 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 GRASPQ7Z6J2 395 aaPredicted RBP12.32□□□□□ -0.44
CLN3-210ENST00000563874 CCDC28AQ8IWP9 274 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 OR4N4Q8N0Y3 316 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 SLC16A11Q8NCK7 471 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 OR5M3Q8NGP4 307 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 OR2A1Q8NGT9 310 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 HYLS1Q96M11 299 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 IER2Q9BTL4 223 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 CYSLTR2Q9NS75 346 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 BABAM2Q9NXR7 383 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 ADAM29Q9UKF5 820 aa12.32□□□□□ -0.44
CLN3-210ENST00000563874 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 IGLON5A6NGN9 336 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR52A4PA6NMU1 304 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CLEC3AO75596 197 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 RPN2P04844 631 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CD3GP09693 182 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 NDUFV2P19404 249 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CXCL3P19876 107 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 STAT5AP42229 794 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 PRR5P85299 388 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 E2F1Q01094 437 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 PRDX1Q06830 199 aaKnown RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 MLF2Q15773 248 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 HBMQ6B0K9 141 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SDE2Q6IQ49 451 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ZNF765Q7L2R6 523 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SYT9Q86SS6 491 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ACBD7Q8N6N7 88 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR11H7Q8NGC8 314 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR6C4Q8NGE1 309 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ZNF431Q8TF32 576 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 HSD17B8Q92506 261 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 DACT3Q96B18 629 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 MS4A6EQ96DS6 147 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 INSM2Q96T92 566 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 TIMP4Q99727 224 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CREBZFQ9NS37 354 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 KCNK6Q9Y257 313 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 DOCK9Q9BZ29 2069 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 A0A0B4J203 849 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 LEUTXA8MZ59 168 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ZGLP1P0C6A0 271 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CSNK2A2P19784 350 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 BTCP35070 178 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 PPM1AP35813 382 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 ACVR1BP36896 505 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SRP54P61011 504 aaKnown RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 CAMK1Q14012 370 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SLC25A35Q3KQZ1 300 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 SLC38A6Q8IZM9 456 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR8H3Q8N146 312 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 LRRC17Q8N6Y2 441 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 BEST4Q8NFU0 473 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR11H4Q8NGC9 324 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR56A1Q8NGH5 318 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 LILRB1Q8NHL6 650 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 PCBD2Q9H0N5 130 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OR51V1Q9H2C8 321 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 KCNN2Q9H2S1 579 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 BEX1Q9HBH7 125 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 UCKL1Q9NWZ5 548 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 KLHL28Q9NXS3 571 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 DAPL1A0PJW8 107 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 OTOL1A6NHN0 477 aaPredicted RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 CFL1P23528 166 aaKnown RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 ATP5A1P25705 553 aaKnown RBP12.31□□□□□ -0.44
CLN3-210ENST00000563874 PTBP1P26599 531 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLN3-210ENST00000563874 VIPR2P41587 438 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 PITPNBP48739 271 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CTAG1AP78358 180 aa12.31□□□□□ -0.44
CLN3-210ENST00000563874 CDK3Q00526 305 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms