RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 SRSF12Q8WXF0 261 aaKnown RBP2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ATP6V0BQ99437 205 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 FEM1AQ9BSK4 669 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 TBC1D10AQ9BXI6 508 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 COMMD4Q9H0A8 199 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ATG10Q9H0Y0 220 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 RPAP3Q9H6T3 665 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-207ENST00000558919 COG4Q9H9E3 785 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 CAB39LQ9H9S4 337 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 P2RX2Q9UBL9 471 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 RAB26Q9ULW5 256 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ARID1AO14497 2285 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 ARHGAP42A6NI28 874 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 ABCD4O14678 606 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 CASKO14936 926 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 ADAM12O43184 909 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 HLA-DPA1P20036 260 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 AHCYP23526 432 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 RBMXP38159 391 aaKnown RBP2.3□□□□□ -2.04
VPS13C-207ENST00000558919 BTDP43251 543 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 KIR2DS2P43631 304 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 TIMM10P62072 90 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 RPL8P62917 257 aaKnown RBP2.3□□□□□ -2.04
VPS13C-207ENST00000558919 TFDP1Q14186 410 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 CFAP221Q4G0U5 840 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 SLC39A4Q6P5W5 647 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 ZCCHC12Q6PEW1 402 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 TMEM184AQ6ZMB5 413 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 C1orf186Q6ZWK4 172 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 HSD11B1LQ7Z5J1 315 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 DCAF4L2Q8NA75 395 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 OR9A1PQ8NGU1 263 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 DQX1Q8TE96 717 aaKnown RBP2.3□□□□□ -2.04
VPS13C-207ENST00000558919 C7orf33Q8WU49 177 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 NCLNQ969V3 563 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 LCE3DQ9BYE3 92 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 CD274Q9NZQ7 290 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 LCMT1Q9UIC8 334 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 KLK12Q9UKR0 248 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 NAP1L2Q9ULW6 460 aaPredicted RBP2.3□□□□□ -2.04
VPS13C-207ENST00000558919 WDR45Q9Y484 360 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 PARD3Q8TEW0 1356 aa2.3□□□□□ -2.04
VPS13C-207ENST00000558919 RPGRIP1LQ68CZ1 1315 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 IGHV1OR15-1A0A075B7D0 117 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 SMIM28A0A1B0GU29 152 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 A0A1B0GUA9 196 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 SYCE3A1L190 88 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 OR8U8P0C7N1 319 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 ZCCHC18P0CG32 403 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 VDRP11473 427 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 GCFC2P16383 781 aaKnown RBP2.29□□□□□ -2.04
VPS13C-207ENST00000558919 TSPAN8P19075 237 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 PRDX6P30041 224 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 NTSP30990 170 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 AKT2P31751 481 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 CDKN3Q16667 212 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 AGBL2Q5U5Z8 902 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 PVRIGQ6DKI7 326 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 OR8G2PQ6IF36 304 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 WDR88Q6ZMY6 472 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 LRRC70Q7Z2Q7 622 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 SKA3Q8IX90 412 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 FAM9BQ8IZU0 186 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 ZNF433Q8N7K0 673 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-207ENST00000558919 ANKRD20A12PQ8NF67 263 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 OR2AP1Q8NGE2 309 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 TRUB1Q8WWH5 349 aaKnown RBP2.29□□□□□ -2.04
VPS13C-207ENST00000558919 NSMCE2Q96MF7 247 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 NFKBIZQ9BYH8 718 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 NMNAT2Q9BZQ4 307 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 KAT8Q9H7Z6 458 aaKnown RBP2.29□□□□□ -2.04
VPS13C-207ENST00000558919 SYTL2Q9HCH5 934 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 APMAPQ9HDC9 416 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 FANCFQ9NPI8 374 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 ZNF331Q9NQX6 463 aaPredicted RBP2.29□□□□□ -2.04
VPS13C-207ENST00000558919 CNOT2Q9NZN8 540 aaKnown RBP2.29□□□□□ -2.04
VPS13C-207ENST00000558919 IL20RAQ9UHF4 553 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 SLCO1B1Q9Y6L6 691 aa2.29□□□□□ -2.04
VPS13C-207ENST00000558919 PLEKHG1Q9ULL1 1385 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 RNF222A6NCQ9 220 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 CFAP73A6NFT4 308 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 TUBAL3A6NHL2 446 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 USP27XA6NNY8 438 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 WASHC1A8K0Z3 465 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 SUPT7LO94864 414 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 IGHV3-48P01763 117 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 ANXA4P09525 319 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-207ENST00000558919 GCKP35557 465 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 GNPDA1P46926 289 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 LIM2P55344 173 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 NUP107P57740 925 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 FUT7Q11130 342 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 DAZ2Q13117 558 aaKnown RBP2.28□□□□□ -2.04
VPS13C-207ENST00000558919 PDIA5Q14554 519 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 CCDC40Q4G0X9 1142 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 TMEM26Q6ZUK4 368 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 RABEPKQ7Z6M1 372 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 ZSCAN4Q8NAM6 433 aaPredicted RBP2.28□□□□□ -2.04
VPS13C-207ENST00000558919 MSANTD4Q8NCY6 345 aa2.28□□□□□ -2.04
VPS13C-207ENST00000558919 TMEM186Q96B77 213 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms