RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TBC1D3EA0A087X179 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3KA0A087X1G2 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 LOC105369274A0A096LPK9 316 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3FA6NER0 549 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 HMX3A6NHT5 357 aa12□□□□□ -0.49
LDLR-207ENST00000558013 C12orf71A8MTZ7 269 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3LB9A6J9 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 MAGEB4O15481 346 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 KLF4O43474 513 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3HP0C7X1 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 ATXN8OSP0DMR3 200 aa12□□□□□ -0.49
LDLR-207ENST00000558013 CHRNB1P11230 501 aa12□□□□□ -0.49
LDLR-207ENST00000558013 HTR2AP28223 471 aa12□□□□□ -0.49
LDLR-207ENST00000558013 ZNF136P52737 540 aa12□□□□□ -0.49
LDLR-207ENST00000558013 SLC16A1P53985 500 aa12□□□□□ -0.49
LDLR-207ENST00000558013 RUNX2Q13950 521 aa12□□□□□ -0.49
LDLR-207ENST00000558013 KLHL12Q53G59 568 aa12□□□□□ -0.49
LDLR-207ENST00000558013 C1QTNF12Q5T7M4 302 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3GQ6DHY5 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3CQ6IPX1 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 ZNF425Q6IV72 752 aa12□□□□□ -0.49
LDLR-207ENST00000558013 FBXO42Q6P3S6 717 aa12□□□□□ -0.49
LDLR-207ENST00000558013 RPTNQ6XPR3 784 aa12□□□□□ -0.49
LDLR-207ENST00000558013 MTSS1LQ765P7 747 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3Q8IZP1 549 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 OR4N4Q8N0Y3 316 aa12□□□□□ -0.49
LDLR-207ENST00000558013 VWA5B2Q8N398 1253 aa12□□□□□ -0.49
LDLR-207ENST00000558013 LINC00471Q8N535 108 aa12□□□□□ -0.49
LDLR-207ENST00000558013 ENKURQ8TC29 256 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TSACCQ96A04 125 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 FRMD6Q96NE9 622 aa12□□□□□ -0.49
LDLR-207ENST00000558013 OR2B2Q9GZK3 357 aa12□□□□□ -0.49
LDLR-207ENST00000558013 NPAP1Q9NZP6 1156 aa12□□□□□ -0.49
LDLR-207ENST00000558013 C2orf16Q68DN1 1984 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TRDV1A0A1B0GX56 115 aa12□□□□□ -0.49
LDLR-207ENST00000558013 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 LANCL1O43813 399 aa12□□□□□ -0.49
LDLR-207ENST00000558013 GUCY1B2O75343 617 aa12□□□□□ -0.49
LDLR-207ENST00000558013 FPR3P25089 353 aa12□□□□□ -0.49
LDLR-207ENST00000558013 FGF9P31371 208 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 TFF2Q03403 129 aa12□□□□□ -0.49
LDLR-207ENST00000558013 GNA13Q14344 377 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TATDN3Q17R31 274 aa12□□□□□ -0.49
LDLR-207ENST00000558013 SNAP47Q5SQN1 464 aa12□□□□□ -0.49
LDLR-207ENST00000558013 THSD4Q6ZMP0 1018 aa12□□□□□ -0.49
LDLR-207ENST00000558013 VASH1Q7L8A9 365 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 AMIGO1Q86WK6 493 aa12□□□□□ -0.49
LDLR-207ENST00000558013 CYB561A3Q8NBI2 242 aa12□□□□□ -0.49
LDLR-207ENST00000558013 MED18Q9BUE0 208 aa12□□□□□ -0.49
LDLR-207ENST00000558013 SLC17A4Q9Y2C5 497 aa12□□□□□ -0.49
LDLR-207ENST00000558013 A0A0G2JMP0 313 aa12□□□□□ -0.49
LDLR-207ENST00000558013 A0A0X1KG70 313 aa12□□□□□ -0.49
LDLR-207ENST00000558013 SYT5O00445 386 aa12□□□□□ -0.49
LDLR-207ENST00000558013 RGS13O14921 159 aa12□□□□□ -0.49
LDLR-207ENST00000558013 EIF2S1P05198 315 aaKnown RBP12□□□□□ -0.49
LDLR-207ENST00000558013 GYPBP06028 91 aa12□□□□□ -0.49
LDLR-207ENST00000558013 NOS3P29474 1203 aa12□□□□□ -0.49
LDLR-207ENST00000558013 IFNGR2P38484 337 aa12□□□□□ -0.49
LDLR-207ENST00000558013 ANXA11P50995 505 aaKnown RBP12□□□□□ -0.49
LDLR-207ENST00000558013 OR10A3P58181 314 aa12□□□□□ -0.49
LDLR-207ENST00000558013 FIGNL1Q6PIW4 674 aa12□□□□□ -0.49
LDLR-207ENST00000558013 ZNF322Q6U7Q0 402 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 MBOAT2Q6ZWT7 520 aa12□□□□□ -0.49
LDLR-207ENST00000558013 NRROSQ86YC3 692 aa12□□□□□ -0.49
LDLR-207ENST00000558013 FRMD1Q8N878 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 MFSD9Q8NBP5 474 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TMEM52Q8NDY8 209 aa12□□□□□ -0.49
LDLR-207ENST00000558013 OR4M2Q8NGB6 313 aa12□□□□□ -0.49
LDLR-207ENST00000558013 OR5T3Q8NGG3 340 aa12□□□□□ -0.49
LDLR-207ENST00000558013 OSTF1Q92882 214 aa12□□□□□ -0.49
LDLR-207ENST00000558013 UPRTQ96BW1 309 aa12□□□□□ -0.49
LDLR-207ENST00000558013 PRSS27Q9BQR3 290 aa12□□□□□ -0.49
LDLR-207ENST00000558013 WACQ9BTA9 647 aa12□□□□□ -0.49
LDLR-207ENST00000558013 APOOQ9BUR5 198 aa12□□□□□ -0.49
LDLR-207ENST00000558013 CCDC86Q9H6F5 360 aaKnown RBP12□□□□□ -0.49
LDLR-207ENST00000558013 ZNF624Q9P2J8 865 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 TNFRSF10DQ9UBN6 386 aa12□□□□□ -0.49
LDLR-207ENST00000558013 PRR19A6NJB7 356 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 RNGTTO60942 597 aaKnown RBP11.99□□□□□ -0.49
LDLR-207ENST00000558013 PVRP15151 417 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 ELK1P19419 428 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 CPN2P22792 545 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 EVX1P49640 407 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 DECR1Q16698 335 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 DUSP6Q16828 381 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 IDNKQ5T6J7 187 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 RTL10Q7L3V2 364 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 CXXC5Q7LFL8 322 aaKnown RBP11.99□□□□□ -0.49
LDLR-207ENST00000558013 ZAR1Q86SH2 424 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 ASCC1Q8N9N2 400 aaKnown RBP11.99□□□□□ -0.49
LDLR-207ENST00000558013 OR2T33Q8NG76 320 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 OR10G6Q8NH81 332 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 TIMM29Q9BSF4 260 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 C1QTNF2Q9BXJ5 285 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 OR51V1Q9H2C8 321 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 OR52D1Q9H346 318 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 KLHL28Q9NXS3 571 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 KCMF1Q9P0J7 381 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 WDR87Q6ZQQ6 2873 aa11.99□□□□□ -0.49
LDLR-207ENST00000558013 ALPK2Q86TB3 2170 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms