RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 A8MWP6 167 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 LRRTM2O43300 516 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 IGHA2P01877 340 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 WNT1P04628 370 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 RAB5AP20339 215 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 OR2B8PP59922 312 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 SLC6A3Q01959 620 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 SPANXN4Q5MJ08 99 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 TMEM244Q5VVB8 128 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 C7orf31Q8N865 590 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 OR4C15Q8NGM1 316 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 OR13C3Q8NGS6 347 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 OR52E6Q96RD3 313 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 ATOH8Q96SQ7 321 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 TREM1Q9NP99 234 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 UQCC1Q9NVA1 299 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 DNAJB11Q9UBS4 358 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 SHISA3A0PJX4 238 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ITGB1BP1O14713 200 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TNFRSF10BO14763 440 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SLC25A27O95847 323 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ACTL6AO96019 429 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 AK1P00568 194 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 EBLN1P0CF75 366 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 AVPR2P30518 371 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 RAD52P43351 418 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 GATMP50440 423 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 PRKXP51817 358 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 WNT4P56705 351 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SRSF3P84103 164 aaKnown RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 IDNKQ5T6J7 187 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 KIAA1161Q6NSJ0 714 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TAPT1Q6NXT6 567 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 NCEH1Q6PIU2 408 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF551Q7Z340 670 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 NPAS3Q8IXF0 933 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 LGI4Q8N135 537 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 FBXO39Q8N4B4 442 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TEX19Q8NA77 164 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 NEIL3Q8TAT5 605 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 RFKQ969G6 155 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TCTN2Q96GX1 697 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 NOL4LQ96MY1 436 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 AMDHD1Q96NU7 426 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 IL4I1Q96RQ9 567 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 FUZQ9BT04 418 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SFXN1Q9H9B4 322 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 GPN1Q9HCN4 374 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TMEM138Q9NPI0 162 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 CTPS2Q9NRF8 586 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TREX1Q9NSU2 369 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 UBP1Q9NZI7 540 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SLC35A3Q9Y2D2 325 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 AAR2Q9Y312 384 aaKnown RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SNRPGP15A8MWD9 76 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 EREGO14944 169 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 EMC8O43402 210 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 CREBL2O60519 120 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 AGR2O95994 175 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 PMP2P02689 132 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 NPSP0C0P6 89 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 PSMB1P20618 241 aaKnown RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 RPL3P39023 403 aaKnown RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 CRISP1P54107 249 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 DLX5P56178 289 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 DAOAP59103 153 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF280AP59817 542 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 KLF9Q13886 244 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SLC5A12Q1EHB4 618 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF626Q68DY1 528 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 PTRHD1Q6GMV3 140 aaKnown RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 RAB12Q6IQ22 244 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 LPCAT3Q6P1A2 487 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SERPINA11Q86U17 422 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 MARCH9Q86YJ5 346 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TP53INP2Q8IXH6 220 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 BBS10Q8TAM1 723 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 FOXRED1Q96CU9 486 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 GPR20Q99678 358 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ARHGAP9Q9BRR9 750 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 C11orf84Q9BUA3 381 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TSSK6Q9BXA6 273 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 NT5C1AQ9BXI3 368 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 ELOVL4Q9GZR5 314 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 OR10A4Q9H209 315 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 SMOC1Q9H4F8 434 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 EPHX3Q9H6B9 360 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 CCDC86Q9H6F5 360 aaKnown RBP12.94□□□□□ -0.34
SHMT2-226ENST00000556825 TUBA4BQ9H853 241 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 DNAJC27Q9NZQ0 273 aa12.94□□□□□ -0.34
SHMT2-226ENST00000556825 CCDC163A0A0D9SF12 145 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 A0A1B0GVC2 190 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 A6NIN4 97 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 ADAM10O14672 748 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 PIP5K1CO60331 668 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 RDH16O75452 317 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 CD200P41217 278 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 MMP15P51511 669 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 F2RL1P55085 397 aa12.93□□□□□ -0.34
SHMT2-226ENST00000556825 MRPS10P82664 201 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms