RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	RAC1	P63000	192 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNF844	Q08AG5	666 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ACSM2A	Q08AH3	577 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	C2orf80	Q0P641	193 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	FAP	Q12884	760 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	TRADD	Q15628	312 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNF672	Q499Z4	452 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	SPIN4	Q56A73	249 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	TCHHL1	Q5QJ38	904 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	PDSS1	Q5T2R2	415 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	CPTP	Q5TA50	214 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	FAM219B	Q5XKK7	198 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ACSM2B	Q68CK6	577 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	TMEM107	Q6UX40	140 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZDHHC24	Q6UX98	284 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	APOOL	Q6UXV4	268 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	DNM1P46	Q6ZS02	220 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ESPNL	Q6ZVH7	1005 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	GALNT10	Q86SR1	603 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	CDYL2	Q8N8U2	506 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	OR2V1	Q8NHB1	315 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	OSTF1	Q92882	214 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	NEUROG1	Q92886	237 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	C11orf24	Q96F05	449 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	APIP	Q96GX9	242 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ADGRG7	Q96K78	797 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	HS6ST2	Q96MM7	605 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	C1QTNF3	Q9BXJ4	246 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	MRPL46	Q9H2W6	279 aa	Known RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	C3orf14	Q9HBI5	128 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	BARX1	Q9HBU1	254 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	HHATL	Q9HCP6	504 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	FBXO34	Q9NWN3	711 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	SON	P18583	2426 aa	Known RBP	11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	NDUFB5	O43674	189 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	KCNH1	O95259	989 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	IGHV4-39	P01824	125 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	THBS1	P07996	1170 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	FAM157C	P0CG43	387 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	DDC	P20711	480 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	IL32	P24001	234 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	ADH6	P28332	368 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	AGTR1	P30556	359 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	GABRA3	P34903	492 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	MAGEA12	P43365	314 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	GSTM5	P46439	218 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	CARD18	P57730	90 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	BTK	Q06187	659 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	RASA2	Q15283	850 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	PGGHG	Q32M88	737 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	SFRP5	Q5T4F7	317 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	HBM	Q6B0K9	141 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	GALNT18	Q6P9A2	607 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	FIGNL1	Q6PIW4	674 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	GABRG1	Q8N1C3	465 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	OR2L13	Q8N349	312 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	METTL6	Q8TCB7	284 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	ELP4	Q96EB1	424 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	USB1	Q9BQ65	265 aa	Known RBP	11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	RHNO1	Q9BSD3	238 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	EBPL	Q9BY08	206 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	ACPT	Q9BZG2	426 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	ALG2	Q9H553	416 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	DDX18	Q9NVP1	670 aa	Known RBP	11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	CDC42EP3	Q9UKI2	254 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	RAB21	Q9UL25	225 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689	GRID1	Q9ULK0	1009 aa		11.28	□□□□□ -0.6
SHMT2-223	ENST00000556689		A0A0J9YW62	118 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TTC36	A6NLP5	189 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689		A8MT66	165 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	NDUFS7	O75251	213 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	GCM2	O75603	506 aa	Predicted RBP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	SUPT7L	O94864	414 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	PSMG1	O95456	288 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	CD8A	P01732	235 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	INHBA	P08476	426 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	ANXA4	P09525	319 aa	Predicted RBP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	PABPC4L	P0CB38	370 aa	Known RBP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	ME2	P23368	584 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	HMOX2	P30519	316 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TIA1	P31483	386 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TSC22D1	Q15714	1073 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TAB1	Q15750	504 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	PRSS53	Q2L4Q9	553 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	GRAMD1B	Q3KR37	738 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TMEM201	Q5SNT2	666 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	TMEM151A	Q8N4L1	468 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	ACTRT2	Q8TDY3	377 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	ROBO4	Q8WZ75	1007 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	SLC9A6	Q92581	669 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	ZBTB8A	Q96BR9	441 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	REXO5	Q96IC2	774 aa	Known RBP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	NPAS1	Q99742	590 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	LMF2	Q9BU23	707 aa	Known RBP	11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	GLIPR2	Q9H4G4	154 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	LRTM1	Q9HBL6	345 aa		11.27	□□□□□ -0.61
SHMT2-223	ENST00000556689	ZDHHC18	Q9NUE0	388 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms