RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 TACC2O95359 2948 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 NUP214P35658 2090 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-206ENST00000553529 RCBTB2O95199 551 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 ALDOCP09972 364 aaKnown RBP16.42■□□□□ 0.22
SHMT2-206ENST00000553529 CHMP24386 653 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 MAPK1P28482 360 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 CCT3P49368 545 aaKnown RBP16.42■□□□□ 0.22
SHMT2-206ENST00000553529 PRIM2P49643 509 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 POU4F3Q15319 338 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 TMEM44Q2T9K0 475 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 CDC73Q6P1J9 531 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 AAGABQ6PD74 315 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 CBLN3Q6UW01 205 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 R3HCC1LQ7Z5L2 792 aaKnown RBP16.42■□□□□ 0.22
SHMT2-206ENST00000553529 GGNQ86UU5 652 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 CEP70Q8NHQ1 597 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 FNDC9Q8TBE3 224 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 DUSP26Q9BV47 211 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 C3orf14Q9HBI5 128 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 MARCOQ9UEW3 520 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-206ENST00000553529 KCNN3Q9UGI6 736 aa16.42■□□□□ 0.22
SHMT2-206ENST00000553529 A0A1W2PNV4 684 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 A0A1W2PPR1 153 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 ALG1L2C9J202 215 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 ANKRD28O15084 1053 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 CFLARO15519 480 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 NDUFB5O43674 189 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 CTAG2O75638 210 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 AQP8O94778 261 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 ZWINTO95229 277 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 IFI6P09912 130 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 GCKP35557 465 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 POU6F2P78424 691 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-206ENST00000553529 ZNF117Q03924 483 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 EMX2Q04743 252 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 MLC1Q15049 377 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 TOMM34Q15785 309 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-206ENST00000553529 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.41■□□□□ 0.22
SHMT2-206ENST00000553529 SPDYE7PQ495Y7 208 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 LRIG3Q6UXM1 1119 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 OR5P2Q8WZ92 322 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 WNT2BQ93097 391 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 OR7D2Q96RA2 312 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 OPN3Q9H1Y3 402 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-206ENST00000553529 SSU72Q9NP77 194 aaKnown RBP16.41■□□□□ 0.22
SHMT2-206ENST00000553529 KCNE5Q9UJ90 142 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 CLEC4AQ9UMR7 237 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 MRPS18CQ9Y3D5 142 aaKnown RBP16.41■□□□□ 0.22
SHMT2-206ENST00000553529 RAP2CQ9Y3L5 183 aa16.41■□□□□ 0.22
SHMT2-206ENST00000553529 HRNRQ86YZ3 2850 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 IGLV3-32A0A0A0MS00 114 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 GOLGA8QA0A0J9YX86 632 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 TMEM120BA0PK00 339 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 GOLGA8OA6NCC3 632 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 FAM47E-STBD1D6RA91 191 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 GOLGA8NF8WBI6 632 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 BIRC5O15392 142 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 BCAS1O75363 584 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 KITP10721 976 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 PEPDP12955 493 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 TBXA2RP21731 343 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 IL12AP29459 219 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 CPOXP36551 454 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 RPL14P50914 215 aaKnown RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 CLDN8P56748 225 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 PSPHP78330 225 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 STX3Q13277 289 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 PON3Q15166 354 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 TESK1Q15569 626 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 FBXL19-AS1Q494R0 122 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 DCST2Q5T1A1 773 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 PPP4R4Q6NUP7 873 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 BTLAQ7Z6A9 289 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 CNEP1R1Q8N9A8 125 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 PSMA8Q8TAA3 256 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 MARK4Q96L34 752 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 RNF145Q96MT1 663 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 UCN2Q96RP3 112 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 RBM24Q9BX46 236 aaKnown RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 BTBD2Q9BX70 525 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 WDR55Q9H6Y2 383 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 MED17Q9NVC6 651 aa16.4■□□□□ 0.22
SHMT2-206ENST00000553529 DNAJB12Q9NXW2 375 aaKnown RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 MRTO4Q9UKD2 239 aaKnown RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 EIF3LQ9Y262 564 aaKnown RBP16.4■□□□□ 0.22
SHMT2-206ENST00000553529 SLC22A20A6NK97 555 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 SDHDO14521 159 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 TM9SF1O15321 606 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 EFNA2O43921 213 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 SCN2BO60939 215 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 TNFRSF21O75509 655 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 SMNDC1O75940 238 aaKnown RBP eCLIP16.39■□□□□ 0.21
SHMT2-206ENST00000553529 PRPS1L1P21108 318 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 PSMA4P25789 261 aaKnown RBP16.39■□□□□ 0.21
SHMT2-206ENST00000553529 DNAJA1P31689 397 aaKnown RBP16.39■□□□□ 0.21
SHMT2-206ENST00000553529 PSMD4P55036 377 aaKnown RBP16.39■□□□□ 0.21
SHMT2-206ENST00000553529 C17orf67Q0P5P2 114 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 FOXF1Q12946 379 aa16.39■□□□□ 0.21
SHMT2-206ENST00000553529 CTU2Q2VPK5 515 aaKnown RBP16.39■□□□□ 0.21
SHMT2-206ENST00000553529 PLPPR5Q32ZL2 321 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms