RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 WDPCPO95876 746 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CBSLP0DN79 551 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 APEX1P27695 318 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CBSP35520 551 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 NUP62P37198 522 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 PREPP48147 710 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ZFP36L1Q07352 338 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ABRQ12979 859 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 RPE65Q16518 533 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 KLHL22Q53GT1 634 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 C3orf38Q5JPI3 329 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 PLEKHS1Q5SXH7 462 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 LUZP2Q86TE4 346 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SERPINA11Q86U17 422 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SLC9B2Q86UD5 537 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 RASGRP3Q8IV61 690 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SLITRK4Q8IW52 837 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 AP3S1Q92572 193 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 INSM2Q96T92 566 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 FEVQ99581 238 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF416Q9BWM5 594 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 EMC7Q9NPA0 242 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ZFP64Q9NPA5 681 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 PCDHB16Q9NRJ7 776 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SH3BP4Q9P0V3 963 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 PLEKHB1Q9UF11 243 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 TMCC3Q9ULS5 477 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 POFUT2Q9Y2G5 429 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF451Q9Y4E5 1061 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SESN1Q9Y6P5 492 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 IGHV5-10-1A0A0J9YXX1 117 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 A0A1W2PPL8 197 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 hCG_1807616A0A1W2PRN6 198 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 BRINP1O60477 761 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SLCO2B1O94956 709 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CCNB2O95067 398 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ADRA2AP08913 450 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 TYRP1P17643 537 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 HK1P19367 917 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 RAB3AP20336 220 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 S100A3P33764 101 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 KDELR2P33947 212 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SDC2P34741 201 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 MAPK9P45984 424 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CDC42P60953 191 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 BTG1P62324 171 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 PPP3R1P63098 170 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 S100A12P80511 92 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 HSF2Q03933 536 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SCRN3Q0VDG4 424 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 DOC2BQ14184 412 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 GPR18Q14330 331 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 RTP5Q14D33 572 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 FCN2Q15485 313 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 VMACQ2NL98 169 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SYTL3Q4VX76 610 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SBSNQ6UWP8 590 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 TFAP2EQ6VUC0 442 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 RTL4Q6ZR62 310 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CBLL1Q75N03 491 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 C1orf52Q8N6N3 182 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 KDF1Q8NAX2 398 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SRFBP1Q8NEF9 429 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 OR6M1Q8NGM8 313 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 WDR48Q8TAF3 677 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CIDECQ96AQ7 238 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 TMEM159Q96B96 161 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 TPD52L3Q96J77 140 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 INPP5KQ9BT40 448 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CD244Q9BZW8 370 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 NRSN2Q9GZP1 204 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SHARPINQ9H0F6 387 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CCDC86Q9H6F5 360 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 NT5DC2Q9H857 520 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 SERHLQ9NQF3 203 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 IMP3Q9NV31 184 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 CLN6Q9NWW5 311 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 NDUFB11Q9NX14 153 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 LYARQ9NX58 379 aaKnown RBP7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF222Q9UK12 451 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ADAM30Q9UKF2 790 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 ZMIZ1Q9ULJ6 1067 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 BAIAP2Q9UQB8 552 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 PRELID3BQ9Y3B1 194 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 MAB21L2Q9Y586 359 aa7.16□□□□□ -1.26
LIMA1-216ENST00000552909 C17orf113A0A1B0GUU1 675 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 TUBAL3A6NHL2 446 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ZNF98A6NK75 572 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ISM1B1AKI9 464 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 M0R129 80 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 TNFRSF11BO00300 401 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 SLC28A1O00337 649 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 MPZL2O60487 215 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PRAMEF10O60809 474 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PTP4A3O75365 173 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ACSM4P0C7M7 580 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 PIPP12273 146 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ANXA3P12429 323 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 ANXA8P13928 327 aa7.15□□□□□ -1.26
LIMA1-216ENST00000552909 FOSL1P15407 271 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms