RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CSF2RAP15509 400 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MANFP55145 182 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TAP2Q03519 686 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 GRIN2CQ14957 1233 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TEAD2Q15562 447 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 MINDY4Q4G0A6 757 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 AADACL4Q5VUY2 407 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 CD276Q5ZPR3 534 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TPGS2Q68CL5 300 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 C1orf94Q6P1W5 598 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF322Q6U7Q0 402 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 FAM92BQ6ZTR7 304 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 RRM2BQ7LG56 351 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NKAIN4Q8IVV8 208 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TBC1D19Q8N5T2 526 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 RFLNBQ8N5W9 214 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 POGLUT1Q8NBL1 392 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SRFBP1Q8NEF9 429 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 OR11G2Q8NGC1 345 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 COQ8AQ8NI60 647 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NEURL3Q96EH8 262 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TCEAL4Q96EI5 215 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 F2RL3Q96RI0 385 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SEC22CQ9BRL7 303 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 FNDC11Q9BVV2 318 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 NT5DC2Q9H857 520 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 TEX10Q9NXF1 929 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PIPOXQ9P0Z9 390 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 PTGFRNQ9P2B2 879 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 ASCC3Q8N3C0 2202 aaKnown RBP4.54□□□□□ -1.68
LIMA1-214ENST00000552783 DENND4CQ5VZ89 1909 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 SCN2AQ99250 2005 aa4.54□□□□□ -1.68
LIMA1-214ENST00000552783 A0A087WV48 116 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 hCG_1807616A0A1W2PRN6 198 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 KDM4EB2RXH2 506 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 CDC42EP2O14613 210 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TGM5O43548 720 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 RNF13O43567 381 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 NDUFA2O43678 99 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FZD7O75084 574 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 REM1O75628 298 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 UBXN7O94888 489 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 CBX7O95931 251 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 IFNA7P01567 189 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 ADH1AP07327 375 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 CLUP10909 449 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 UQCRC2P22695 453 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 ACVR1BP36896 505 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 BUD31P41223 144 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 MAGEB1P43366 347 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 VEGFCP49767 419 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 BLVRAP53004 296 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TSPAN5P62079 268 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 HSF2Q03933 536 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SLC3A1Q07837 685 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 COX10Q12887 443 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 KLHL12Q53G59 568 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TCTE1Q5JU00 501 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 ENTPD8Q5MY95 495 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 PLEKHS1Q5SXH7 462 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SHEQ5VZ18 495 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 BICRALQ6AI39 1079 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FCRLBQ6BAA4 426 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 RGS7BPQ6MZT1 257 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SLC27A4Q6P1M0 643 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SFXN4Q6P4A7 337 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 ARL9Q6T311 187 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TFAP2EQ6VUC0 442 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SLC36A4Q6YBV0 504 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 RD3Q7Z3Z2 195 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SDR16C5Q8N3Y7 309 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TRMT10AQ8TBZ6 339 aaKnown RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 ECHDC3Q96DC8 303 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FCRL4Q96PJ5 515 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 UBL7Q96S82 380 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 MACROD1Q9BQ69 325 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 GSDMCQ9BYG8 508 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM168Q9H0V1 697 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 CLEC4MQ9H2X3 399 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 LHX9Q9NQ69 397 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 HINT3Q9NQE9 182 aaKnown RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SEMA4GQ9NTN9 838 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 WSB2Q9NYS7 404 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TAS2R7Q9NYW3 318 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 GPR160Q9UJ42 338 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FBXL4Q9UKA2 621 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 CBLCQ9ULV8 474 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SPATA2Q9UM82 520 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 PCYT1BQ9Y5K3 369 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 AP1M2Q9Y6Q5 423 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 MTCL1Q9Y4B5 1905 aaKnown RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 COL4A3Q01955 1670 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FRMPD3Q5JV73 1810 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FEZF1A0PJY2 475 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TBC1D3BA6NDS4 549 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 FAM74A7A6NL05 159 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 CPSF4LA6NMK7 179 aaKnown RBP4.53□□□□□ -1.68
LIMA1-214ENST00000552783 TMPRSS11DO60235 418 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 SOCS5O75159 536 aa4.53□□□□□ -1.68
LIMA1-214ENST00000552783 MRPL3P09001 348 aaKnown RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms