RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 STATHP02808 62 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 ALPPL2P10696 532 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 DRD5P21918 477 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 HTR1FP30939 366 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 FASLGP48023 281 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 FZD2Q14332 565 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 PRTGQ2VWP7 1150 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 PLK5Q496M5 336 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 WDR45BQ5MNZ6 344 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 CD200R1LQ6Q8B3 271 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 TMPRSS11FQ6ZWK6 438 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 PHC2Q8IXK0 858 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 ZNF595Q8IYB9 648 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 COX18Q8N8Q8 333 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 JPH3Q8WXH2 748 aaPredicted RBP9.18□□□□□ -0.94
SS18-205ENST00000542420 MED30Q96HR3 178 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 HOXD1Q9GZZ0 328 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 RAB33BQ9H082 229 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 EVA1BQ9NVM1 165 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 GPR55Q9Y2T6 319 aaPredicted RBP9.18□□□□□ -0.94
SS18-205ENST00000542420 F5P12259 2224 aa9.18□□□□□ -0.94
SS18-205ENST00000542420 LOC100506127A0A0U1RQW1 187 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 A0A1W2PS29 197 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 SHISA7A6NL88 538 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 CPSF4LA6NMK7 179 aaKnown RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 RCBTB2O95199 551 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 IGF2P01344 180 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ADRA2AP08913 450 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 HBQ1P09105 142 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 HSMCR30P0CW71 290 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 CFL1P23528 166 aaKnown RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 TRHRP34981 398 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 DEFA1P59665 94 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 DEFA3P59666 94 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 SIM1P81133 766 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 IFITM3Q01628 133 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 FAM53BQ14153 422 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 SPANXN2Q5MJ10 180 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 HSDL2Q6YN16 418 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 LAPTM4BQ86VI4 370 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 LYSMD2Q8IV50 215 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 CLIP4Q8N3C7 705 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ESX1Q8N693 406 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 C19orf47Q8N9M1 422 aaKnown RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 OR6C4Q8NGE1 309 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 OR10G6Q8NH81 332 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 SLC9A6Q92581 669 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 UFD1Q92890 307 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 KIAA1143Q96AT1 154 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 RNFT2Q96EX2 444 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 CCDC3Q9BQI4 270 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ASPNQ9BXN1 380 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 NUAK2Q9H093 628 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 KLHL25Q9H0H3 589 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 RABL2AQ9UBK7 228 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 CA5BQ9Y2D0 317 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 NUP210LQ5VU65 1888 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 TMEM265A0A087WTH1 108 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 LOC105369274A0A096LPK9 316 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 LOC102723532A0A0G2JNH3 316 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 SYNDIG1LA6NDD5 238 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 UNC119BA6NIH7 251 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 C2CD4DB7Z1M9 353 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 FGF17O60258 216 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 FCMRO60667 390 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 LYPD3O95274 346 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 IGFBP1P08833 259 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 THEGLP0DJG4 465 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 RNH1P13489 461 aaKnown RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 CTSEP14091 401 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 NT5EP21589 574 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 PTBP1P26599 531 aaKnown RBP eCLIP9.17□□□□□ -0.943e-9■■■■□ 23.3
SS18-205ENST00000542420 GABRA5P31644 462 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 AVPR1BP47901 424 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 LSSP48449 732 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 NUBP1P53384 320 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 HHEXQ03014 270 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 RUNX1T1Q06455 604 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 GAS6Q14393 721 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ZNHIT3Q15649 155 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 TAF8Q7Z7C8 310 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ZBTB46Q86UZ6 589 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 CDK20Q8IZL9 346 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 OR4N4Q8N0Y3 316 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ZNF485Q8NCK3 441 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 OR52L1Q8NGH7 329 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 OR8D4Q8NGM9 314 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 SLC2A12Q8TD20 617 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 AP3S1Q92572 193 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ANKRD9Q96BM1 317 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 KLHDC7BQ96G42 594 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 TCTN2Q96GX1 697 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 FAM46AQ96IP4 442 aaKnown RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 FCRL4Q96PJ5 515 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 PRSS27Q9BQR3 290 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 ARHGAP9Q9BRR9 750 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 PLA2G12AQ9BZM1 189 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 TRIM2Q9C040 744 aa9.17□□□□□ -0.94
SS18-205ENST00000542420 C6orf106Q9H6K1 298 aaPredicted RBP9.17□□□□□ -0.94
SS18-205ENST00000542420 ASB6Q9NWX5 421 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms