RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ZNF155Q12901 538 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 SPRED3Q2MJR0 410 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 GTDC1Q4AE62 458 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNF628Q5EBL2 1059 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 Q5PR19 223 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 LRIF1Q5T3J3 769 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 RIPPLY2Q5TAB7 128 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 TMEM64Q6YI46 380 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 RNF111Q6ZNA4 994 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 RINLQ6ZS11 566 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 SEM1Q6ZVN7 128 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 DEFB107AQ8IZN7 70 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 PGAM4Q8N0Y7 254 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 CLEC4FQ8N1N0 589 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 RBM15BQ8NDT2 890 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 RNASE6Q93091 150 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 MCUR1Q96AQ8 359 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 FAM120BQ96EK7 910 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 MS4A4EQ96PG1 132 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 CXorf21Q9HAI6 301 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 TPT1P8Q9HAU6 139 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 EQTNQ9NQ60 294 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 VAPAQ9P0L0 249 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 SLAMF8Q9P0V8 285 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 B4GALT7Q9UBV7 327 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 FAF1Q9UNN5 650 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 CFL2Q9Y281 166 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 PCDHB14Q9Y5E9 798 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 A0A087WV62 115 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SAGE2PA6NJ88 616 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 FAM166BA8MTA8 275 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 PLOD2O00469 737 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SMAD7O15105 426 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 PLOD3O60568 738 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 CT62P0C5K7 136 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 CRATP43155 626 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 MTPNP58546 118 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 GAB1Q13480 694 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 EXOSC7Q15024 291 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNHIT3Q15649 155 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 TRMT12Q53H54 448 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 C1orf185Q5T7R7 199 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 HLA-DQA1Q5Y7H0 255 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 DLEU7Q6UYE1 221 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 DGAT2L6Q6ZPD8 337 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 TRILQ7L0X0 811 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC29A4Q7RTT9 530 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 C6orf120Q7Z4R8 191 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 LRRC75A-AS1Q8N1F1 130 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 CYP4Z2PQ8N1L4 340 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 ARHGAP24Q8N264 748 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 MORN4Q8NDC4 146 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 OR7G2Q8NG99 324 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 OR7G1Q8NGA0 311 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 OR52R1Q8NGF1 315 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 PSMA8Q8TAA3 256 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 PNPT1Q8TCS8 783 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC2A12Q8TD20 617 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 ZFP90Q8TF47 636 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 AURKBQ96GD4 344 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 FBXL20Q96IG2 436 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 Q96MF0 132 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 ANKRD27Q96NW4 1050 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 ECSITQ9BQ95 431 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC39A3Q9BRY0 314 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 BTBD10Q9BSF8 475 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 C1orf21Q9H246 121 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SPAG4Q9NPE6 437 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SIRT3Q9NTG7 399 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 PRODH2Q9UF12 536 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 AP3M1Q9Y2T2 418 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 CLDN16Q9Y5I7 305 aa11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.4□□□□□ -0.58
CLSTN3-208ENST00000538933 MEGF8Q7Z7M0 2845 aa11.4□□□□□ -0.59
CLSTN3-208ENST00000538933 A0A0G2JMM0 328 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 A0A1W2PPB8 328 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 A0A1W2PRS3 328 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 TMEM247A6NEH6 219 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 KIR3DP1A8MWS1 328 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 UPK1AO00322 258 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 AQP7O14520 342 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 WDR1O75083 606 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 HRGP04196 525 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 IFI6P09912 130 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 MATN1P21941 496 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 SSTR4P31391 388 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 KHKP50053 298 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 SLC7A2P52569 658 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 LASP1Q14847 261 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 CYP51A1Q16850 503 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 RUNDC3AQ59EK9 446 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 NANOGP8Q6NSW7 305 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 PRSS57Q6UWY2 283 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 YTHDF3Q7Z739 585 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 RNF130Q86XS8 419 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 OR2L13Q8N349 312 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 APCDD1LQ8NCL9 501 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 NAXEQ8NCW5 288 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 B3GNT7Q8NFL0 401 aa11.39□□□□□ -0.59
CLSTN3-208ENST00000538933 OR2M7Q8NG81 312 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms