RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SRYQ05066 204 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 FBXL19-AS1Q494R0 122 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 TTMPQ5BVD1 217 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 SPANXN4Q5MJ08 99 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 CDC73Q6P1J9 531 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 ZCCHC12Q6PEW1 402 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 CBLN3Q6UW01 205 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 GGNQ86UU5 652 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 ANKRD46Q86W74 232 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 IFNEQ86WN2 208 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 OR4K17Q8NGC6 315 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 OR8J2Q8NGG1 315 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 OR5D16Q8NGK9 328 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 PPP1R14CQ8TAE6 165 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 C14orf79Q96F83 325 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 OR7D2Q96RA2 312 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 TRIB1Q96RU8 372 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 STACQ99469 402 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 PAIP2Q9BPZ3 127 aaKnown RBP9.62□□□□□ -0.87
CD44-227ENST00000528086 BTBD2Q9BX70 525 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 DUSP22Q9NRW4 184 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 SLC6A13Q9NSD5 602 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 AIG1Q9NVV5 245 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 GIN1Q9NXP7 522 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 NOP53Q9NZM5 478 aaKnown RBP9.62□□□□□ -0.87
CD44-227ENST00000528086 PPP4R1LQ9P1A2 415 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 MARCOQ9UEW3 520 aaPredicted RBP9.62□□□□□ -0.87
CD44-227ENST00000528086 SNX8Q9Y5X2 465 aa9.62□□□□□ -0.87
CD44-227ENST00000528086 ANKRD17O75179 2603 aaKnown RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 ZNF469Q96JG9 3925 aaPredicted RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 HIVEP1P15822 2718 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 FAM221AA4D161 298 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 HSPB2A8KAH6 182 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 GMFGO60234 142 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 FCMRO60667 390 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 TNFSF13O75888 250 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 ALOX5P09917 674 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 NID1P14543 1247 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 BMP5P22003 454 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 EPHA3P29320 983 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 SHC1P29353 583 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 DGKQP52824 942 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 ZNHIT3Q15649 155 aaPredicted RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 HSPB2Q16082 182 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 BCL2A1Q16548 175 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 CTU2Q2VPK5 515 aaKnown RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 PGS1Q32NB8 556 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 NDUFAF6Q330K2 333 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 SLC25A35Q3KQZ1 300 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 SLC9B1Q4ZJI4 515 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 KLHL26Q53HC5 615 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 HHATQ5VTY9 493 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 SZRD1Q7Z422 152 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 GDF7Q7Z4P5 450 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 PM20D2Q8IYS1 436 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 SFXN5Q8TD22 340 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 FIG4Q92562 907 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 TESCQ96BS2 214 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 ZNF845Q96IR2 970 aaPredicted RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 MAELQ96JY0 434 aaKnown RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 ADGRG7Q96K78 797 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 SFXN2Q96NB2 322 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 INPP5KQ9BT40 448 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 ACTRT3Q9BYD9 372 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 C3orf14Q9HBI5 128 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 DKKL1Q9UK85 242 aa9.61□□□□□ -0.87
CD44-227ENST00000528086 EIF3LQ9Y262 564 aaKnown RBP9.61□□□□□ -0.87
CD44-227ENST00000528086 GOLGA8QA0A0J9YX86 632 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 GOLGA8OA6NCC3 632 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 GOLGA8NF8WBI6 632 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 RNASET2O00584 256 aaKnown RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 RCBTB2O95199 551 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 KCNH1O95259 989 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 LINGO3P0C6S8 592 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 LBPP18428 481 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 RPL3P39023 403 aaKnown RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 CDKN2CP42773 168 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 SLC6A8P48029 635 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 PRIM2P49643 509 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 NME5P56597 212 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 POU6F2P78424 691 aaPredicted RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 ZNF117Q03924 483 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 TLE4Q04727 773 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 C17orf67Q0P5P2 114 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 TP53BP2Q13625 1128 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 GUSBP1Q15486 140 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 MAPK11Q15759 364 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 TOMM34Q15785 309 aaPredicted RBP9.6□□□□□ -0.87
CD44-227ENST00000528086 MAPK14Q16539 360 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 PLPPR5Q32ZL2 321 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 DCST2Q5T1A1 773 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 AGBL2Q5U5Z8 902 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 AP1ARQ63HQ0 302 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 HEPHL1Q6MZM0 1159 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 C6orf120Q7Z4R8 191 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 CROCCP2Q86T23 111 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 HOMEZQ8IX15 550 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 LRRC34Q8IZ02 419 aa9.6□□□□□ -0.87
CD44-227ENST00000528086 GCNT2Q8N0V5 402 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms