RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 VAPAQ9P0L0 249 aa13□□□□□ -0.33
NUP54-216ENST00000514901 SLAMF8Q9P0V8 285 aa13□□□□□ -0.33
NUP54-216ENST00000514901 P2RX2Q9UBL9 471 aa13□□□□□ -0.33
NUP54-216ENST00000514901 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13□□□□□ -0.33
NUP54-216ENST00000514901 OSGIN2Q9Y236 505 aa13□□□□□ -0.33
NUP54-216ENST00000514901 ZNF835Q9Y2P0 537 aa13□□□□□ -0.33
NUP54-216ENST00000514901 WDR45Q9Y484 360 aa13□□□□□ -0.33
NUP54-216ENST00000514901 DTNAQ9Y4J8 743 aa13□□□□□ -0.33
NUP54-216ENST00000514901 UBR5O95071 2799 aaPredicted RBP13□□□□□ -0.33
NUP54-216ENST00000514901 MYO7BQ6PIF6 2116 aa13□□□□□ -0.33
NUP54-216ENST00000514901 DIDO1Q9BTC0 2240 aaKnown RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 A0A1B0GUH1 482 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 PYCARD-AS1I3L0S3 204 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 PRRG2O14669 202 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 ADAM10O14672 748 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 BCKDKO14874 412 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 FCMRO60667 390 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 SLC19A2O60779 497 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 CELA3AP09093 270 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 BMP2P12643 396 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 CD1EP15812 388 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 ABOP16442 354 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 DSCR4P56555 118 aaPredicted RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 NFYCQ13952 458 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 CYLC2Q14093 348 aaPredicted RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 GPR68Q15743 365 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 ZNF141Q15928 474 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 ZNF630Q2M218 657 aaPredicted RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 MMEL1Q495T6 779 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 RUNDC3AQ59EK9 446 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 OR5M10Q6IEU7 315 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 PIGWQ7Z7B1 504 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 DHDDSQ86SQ9 333 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 MTDHQ86UE4 582 aaKnown RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 MSRB3Q8IXL7 192 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 EID3Q8N140 333 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 ZNF619Q8N2I2 560 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 PCYOX1LQ8NBM8 494 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 FAM83FQ8NEG4 500 aaPredicted RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 OR2M3Q8NG83 312 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 RP9Q8TA86 221 aaKnown RBP12.99□□□□□ -0.33
NUP54-216ENST00000514901 NEIL3Q8TAT5 605 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 OR2B2Q9GZK3 357 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 DSN1Q9H410 356 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 FBXL2Q9UKC9 423 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 FLNCQ14315 2725 aa12.99□□□□□ -0.33
NUP54-216ENST00000514901 GCN1Q92616 2671 aaKnown RBP12.98□□□□□ -0.33
NUP54-216ENST00000514901 GTPBP1O00178 669 aaKnown RBP12.98□□□□□ -0.33
NUP54-216ENST00000514901 KIAA0513O60268 411 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 H6PDO95479 791 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 C1QCP02747 245 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 TFPTP0C1Z6 253 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 ETFAP13804 333 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 GPX2P18283 190 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 DPP4P27487 766 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 ADH7P40394 386 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 CRISP3P54108 245 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 GLYR1Q49A26 553 aaPredicted RBP12.98□□□□□ -0.33
NUP54-216ENST00000514901 PRAMEF8Q5VWM4 474 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 PRAMEF7Q5VXH5 474 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 TYW3Q6IPR3 259 aaKnown RBP12.98□□□□□ -0.33
NUP54-216ENST00000514901 RETREG3Q86VR2 466 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 CHERPQ8IWX8 916 aaKnown RBP12.98□□□□□ -0.33
NUP54-216ENST00000514901 METTL25Q8N6Q8 603 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 ANKFN1Q8N957 763 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 FAM57AQ8TBR7 257 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 PHOSPHO1Q8TCT1 267 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 ANKRD27Q96NW4 1050 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 CGREF1Q99674 301 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 SH3GL1Q99961 368 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 RTN4RQ9BZR6 473 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 GID8Q9NWU2 228 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 TAS2R10Q9NYW0 307 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 MED11Q9P086 117 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 SUCOQ9UBS9 1254 aaKnown RBP12.98□□□□□ -0.33
NUP54-216ENST00000514901 DKKL1Q9UK85 242 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 ADAM21Q9UKJ8 722 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 MKLN1Q9UL63 735 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 ARL2BPQ9Y2Y0 163 aa12.98□□□□□ -0.33
NUP54-216ENST00000514901 A0A087WZY1 265 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 A0A0G2JPF8 293 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 LOC100653049A0A140TA62 436 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 PRAMEF27A3QJZ7 478 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 SERINC4A6NH21 518 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 HNRNPCL2B2RXH8 293 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 HNRNPCL3B7ZW38 293 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 LINC01387J3KSC0 135 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 FBP2O00757 339 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 ZIC3O60481 467 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 EIF4E2O60573 245 aaKnown RBP12.97□□□□□ -0.33
NUP54-216ENST00000514901 HNRNPCL1O60812 293 aaKnown RBP12.97□□□□□ -0.33
NUP54-216ENST00000514901 TNFRSF21O75509 655 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 UGT2B17O75795 530 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 KRT34O76011 436 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 ACTL6AO96019 429 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 HNRNPCL4P0DMR1 293 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 CA7P43166 264 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 HSF1Q00613 529 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 CHRNEQ04844 493 aa12.97□□□□□ -0.33
NUP54-216ENST00000514901 FUT5Q11128 374 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms